MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:25.7 nTPM
HPA:25.7 nTPM
GTEx:32.0 nTPM
FANTOM5:27.0 Scaled Tags Per Million
Pig:47.6 nTPM
Mouse:12.3 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.8
2019 Male, age 18, unknown 27.9
2411 Female, age 72, unknown 24.4
2586 Male, age 75, left hemisphere 23.5
1830 Male, age 51, unknown 23.4
1870 Female, age 42, unknown 22.9
1833 Male, age 53, unknown 22.2
2828 Female, age 72, unknown 20.9
1827 Male, age 72, unknown 18.7
2666 Male, age 74, left hemisphere 18.3
2219 Male, age 76, both hemispheres 16.0
Dorsal raphe nucleus
nTPM: 20.0
2750 Male, age 76, both hemispheres 26.5
1828 Male, age 53, unknown 20.0
2047 Male, age 72, unknown 19.8
2016 Female, age 72, unknown 16.9
2298 Female, age 72, unknown 16.8
Inferior colliculus
nTPM: 18.5
1890 Male, age 53, unknown 19.9
1848 Female, age 42, unknown 18.9
2097 Female, age 72, unknown 18.2
2849 Male, age 72, unknown 17.1
Median raphe nucleus
nTPM: 21.4
2220 Male, age 76, midline 21.4
Pedunculopontine tegmental nucleus
nTPM: 22.1
2334 Male, age 80, both hemispheres 25.6
2338 Male, age 61, both hemispheres 20.6
1921 Female, age 85, both hemispheres 20.0
Periaquaductal grey, anterior
nTPM: 19.4
2502 Female, age 75, unknown 22.0
1795 Male, age 51, unknown 18.1
1947 Male, age 18, unknown 18.1
Periaquaductal grey, dorsal
nTPM: 17.1
1831 Male, age 72, unknown 19.8
2850 Male, age 76, both hemispheres 17.3
2464 Female, age 72, unknown 16.9
1840 Male, age 53, unknown 14.6
Periaquaductal grey, lateral
nTPM: 18.3
2272 Male, age 74, both hemispheres 20.2
2053 Male, age 18, unknown 18.7
2140 Male, age 76, both hemispheres 16.1
Pretectal area
nTPM: 18.7
2273 Male, age 74, both hemispheres 23.8
1816 Male, age 51, unknown 19.3
2407 Male, age 75, both hemispheres 19.1
1815 Male, age 53, unknown 18.9
2007 Male, age 72, unknown 18.8
1817 Female, age 42, unknown 18.5
2667 Female, age 75, unknown 18.4
2316 Male, age 76, right hemisphere 18.1
2825 Male, age 18, unknown 18.1
2224 Female, age 72, unknown 16.7
1944 Female, age 72, unknown 16.4
Red nucleus
nTPM: 25.7
1865 Male, age 51, unknown 29.8
2588 Male, age 74, left hemisphere 27.7
2785 Male, age 18, unknown 27.1
1904 Male, age 53, unknown 27.0
1821 Female, age 72, unknown 26.8
2823 Male, age 76, right hemisphere 26.5
2584 Male, age 75, left hemisphere 26.3
2769 Male, age 72, unknown 26.1
2227 Male, age 72, unknown 25.8
1954 Female, age 42, unknown 23.7
2725 Female, age 75, unknown 22.1
2503 Female, age 72, unknown 19.8
Substantia nigra
nTPM: 17.6
1889 Female, age 72, unknown 20.6
2583 Male, age 75, right hemisphere 20.1
1941 Male, age 53, unknown 18.8
2665 Male, age 74, both hemispheres 18.0
1851 Male, age 51, unknown 17.6
1916 Female, age 42, unknown 17.3
2409 Female, age 72, unknown 16.7
2241 Male, age 72, unknown 16.5
2590 Female, age 75, unknown 16.0
2699 Male, age 18, unknown 14.6
Superior colliculus
nTPM: 19.9
2587 Male, age 74, left hemisphere 24.3
2668 Female, age 75, unknown 22.0
2664 Male, age 75, both hemispheres 20.6
1995 Male, age 72, unknown 20.5
2261 Male, age 18, unknown 20.5
1913 Female, age 42, unknown 20.4
1796 Male, age 53, unknown 18.5
1895 Male, age 76, right hemisphere 17.7
2087 Female, age 72, unknown 17.4
1839 Male, age 51, unknown 17.0
Ventral tegmental area
nTPM: 22.7
2223 Female, age 72, unknown 33.4
2021 Male, age 53, unknown 21.3
1942 Male, age 51, unknown 21.2
2218 Male, age 76, both hemispheres 21.2
2410 Female, age 72, unknown 21.2
1915 Female, age 42, unknown 18.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.0
Samples: 139

Max nTPM: 125.9
Min nTPM: 6.8
Std nTPM: 21.2
Median nTPM: 26.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 125.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 124.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 119.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 80.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 70.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 70.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 69.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 65.9
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 63.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 61.2
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 61.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.0
FF:10158-103A5 76 years, female 27.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.6
Pig sample Sample description nTPM
Midbrain
nTPM: 45.8
Samples: 4

Max nTPM: 74.8
Min nTPM: 10.2
Sample A Female 10.2
Sample B Female 33.6
Sample C Male 64.7
Sample D Male 74.8
Periaqueductal gray
nTPM: 44.5
Samples: 3

Max nTPM: 59.6
Min nTPM: 36.7
Sample B Female 37.3
Sample C Male 59.6
Sample D Male 36.7
Substantia nigra
nTPM: 42.8
Samples: 4

Max nTPM: 68.7
Min nTPM: 9.2
Sample A Female 68.7
Sample B Female 29.7
Sample C Male 63.7
Sample D Male 9.2
Superior colliculi
nTPM: 47.6
Samples: 4

Max nTPM: 66.7
Min nTPM: 28.0
Sample A Female 66.7
Sample B Female 28.0
Sample C Male 50.7
Sample D Male 44.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.3
Samples: 4

Max nTPM: 14.6
Min nTPM: 7.1
Sample A Male 14.6
Sample B Male 7.1
Sample C Female 14.4
Sample D Female 13.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
1818 Antisense, RP_040526_02_F09, Mouse strain C57BL/6J (56 days, male) 0.4
1819 Antisense, RP_040526_02_F09, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.