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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: High
Enterocytes: Not detected
Enterocytes - Microvilli: Medium
Goblet cells: High
Paneth cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:638.1 nTPM
HPA:638.1 nTPM
GTEx:614.7 nTPM
FANTOM5:100.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA007286
Endocrine cells High
Enterocytes Not detected
Enterocytes - Microvilli Medium
Goblet cells High
Paneth cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 638.1
overview
Male, age 65
Small intestine sample 232
nTPM: 159.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 733.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1324.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 335

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 614.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 614.7
Samples: 187

Max nTPM: 3899.1
Min nTPM: 0.1
Std nTPM: 751.8
Median nTPM: 332.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 3899.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 3699.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 3552.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 3402.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 2769.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 2706.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 2548.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 2273.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1998.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1967.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1871.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1870.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1815.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1788.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1760.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1727.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1697.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1663.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1605.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1585.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1578.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1555.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1474.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1395.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1391.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1382.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1304.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1229.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1194.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1167.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1150.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1148.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1137.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1124.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1105.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1092.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1091.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1074.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1074.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1063.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1044.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1008.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 980.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 978.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 968.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 960.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 954.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 945.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 941.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 873.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 871.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 863.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 856.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 852.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 832.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 831.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 755.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 749.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 744.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 731.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 710.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 707.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 684.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 666.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 645.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 640.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 637.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 636.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 629.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 628.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 605.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 597.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 593.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 580.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 573.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 554.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 539.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 504.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 500.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 486.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 483.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 464.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 464.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 463.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 458.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 442.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 433.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 378.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 375.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 362.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 361.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 351.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 337.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 332.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 321.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 317.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 308.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 305.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 301.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 301.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 286.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 280.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 271.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 247.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 240.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 234.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 220.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 215.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 206.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 203.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 201.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 179.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 168.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 165.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 160.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 158.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 148.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 131.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 125.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 125.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 122.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 119.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 118.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 118.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 117.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 107.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 93.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 92.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 90.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 84.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 84.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 83.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 82.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 76.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 75.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 74.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 70.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 68.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 66.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 58.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 57.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 48.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 43.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 39.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 39.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 38.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 37.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 36.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 34.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 33.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 29.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 26.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 24.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 22.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 18.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 17.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 17.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 16.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 16.5
GTEX-1192X-2526-SM-59868 50-59 years, male 16.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 15.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 12.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 12.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 11.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 10.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 10.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 10.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 8.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 8.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 7.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 7.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 7.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 7.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 7.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 6.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 6.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 6.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 5.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 5.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 4.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 2.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 2.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 0.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 0.1
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 100.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 100.5
FF:10024-101D6 15,40,85 years, mixed 100.5

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