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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM EPIDIDYMIS
ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:65.5 nTPM
HPA:65.5 nTPM
GTEx:182.1 nTPM
FANTOM5:546.0 Scaled Tags Per Million
Pig:22.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 65.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 52.1
1981 Female, age 72, midline 59.7
2565 Male, age 75, midline 51.4
2194 Female, age 79, both hemispheres 50.7
2048 Male, age 55, midline 50.5
2816 Male, age 47, midline 48.3
Cervical spinal cord, dorsal horn
nTPM: 58.4
2069 Male, age 47, both hemispheres 75.9
2173 Female, age 72, unknown 58.9
2297 Male, age 75, both hemispheres 55.3
1877 Male, age 55, unknown 54.0
2296 Male, age 66, both hemispheres 53.9
2721 Male, age 90, both hemispheres 52.6
Cervical spinal cord, ventral horn
nTPM: 65.5
2098 Female, age 72, unknown 96.3
2809 Male, age 90, both hemispheres 75.2
2480 Male, age 75, both hemispheres 63.6
2295 Male, age 66, both hemispheres 59.5
2068 Male, age 55, unknown 52.1
2820 Female, age 79, both hemispheres 46.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 182.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 182.1
Samples: 159

Max nTPM: 1002.8
Min nTPM: 23.8
Std nTPM: 144.6
Median nTPM: 134.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1002.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 643.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 635.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 600.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 586.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 556.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 500.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 494.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 469.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 432.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 407.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 395.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 376.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 371.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 362.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 358.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 354.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 350.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 327.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 323.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 322.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 318.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 317.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 311.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 308.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 306.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 305.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 298.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 289.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 280.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 280.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 278.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 267.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 267.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 263.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 262.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 260.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 247.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 240.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 235.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 231.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 231.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 230.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 228.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 227.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 222.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 218.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 213.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 212.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 212.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 198.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 194.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 192.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 191.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 191.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 190.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 186.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 185.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 179.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 175.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 175.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 172.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 165.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 161.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 161.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 158.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 157.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 157.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 156.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 155.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 152.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 149.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 148.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 145.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 142.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 141.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 135.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 135.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 134.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 134.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 126.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 125.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 125.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 121.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 119.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 118.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 118.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 117.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 117.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 116.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 116.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 115.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 115.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 115.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 110.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 110.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 108.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 107.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 107.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 106.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 106.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 105.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 104.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 103.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 101.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 99.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 98.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 98.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 95.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 95.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 95.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 94.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 93.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 93.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 92.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 91.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 88.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 88.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 87.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 84.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 81.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 79.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 77.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 76.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 76.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 75.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 74.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 71.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 70.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 70.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 70.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 69.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 68.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 68.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 66.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 65.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 65.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 64.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 64.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 64.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 62.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 61.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 60.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 59.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 57.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 57.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 56.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 53.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 52.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 51.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 50.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 49.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 45.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 42.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 39.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 38.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 38.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 32.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 23.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 546.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 546.0
FF:10181-103D1 60 years, female 672.0
FF:10159-103A6 76 years, female 419.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 22.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 22.5
Samples: 4

Max nTPM: 38.3
Min nTPM: 8.1
Sample A Female 8.1
Sample B Female 28.8
Sample C Male 38.3
Sample D Male 14.9
Ventral spinal cord
nTPM: 17.0
Samples: 4

Max nTPM: 22.7
Min nTPM: 6.8
Sample A Female 6.8
Sample B Female 17.5
Sample C Male 20.8
Sample D Male 22.7

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