MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:82.9 nTPM
HPA:82.9 nTPM
GTEx:95.8 nTPM
FANTOM5:164.1 Scaled Tags Per Million
Pig:105.3 nTPM
Mouse:253.0 nTPM
Allen mouse:4.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 82.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.6
2586 Male, age 75, left hemisphere 95.9
2666 Male, age 74, left hemisphere 78.3
1827 Male, age 72, unknown 75.7
2019 Male, age 18, unknown 72.4
1870 Female, age 42, unknown 72.0
2411 Female, age 72, unknown 70.4
2828 Female, age 72, unknown 69.3
2219 Male, age 76, both hemispheres 67.7
1833 Male, age 53, unknown 67.4
1830 Male, age 51, unknown 66.7
Dorsal raphe nucleus
nTPM: 71.5
2047 Male, age 72, unknown 74.2
2298 Female, age 72, unknown 74.2
1828 Male, age 53, unknown 72.4
2750 Male, age 76, both hemispheres 71.1
2016 Female, age 72, unknown 65.8
Inferior colliculus
nTPM: 72.6
2097 Female, age 72, unknown 79.8
1890 Male, age 53, unknown 75.6
1848 Female, age 42, unknown 69.4
2849 Male, age 72, unknown 65.5
Median raphe nucleus
nTPM: 77.2
2220 Male, age 76, midline 77.2
Pedunculopontine tegmental nucleus
nTPM: 68.3
2334 Male, age 80, both hemispheres 74.2
1921 Female, age 85, both hemispheres 73.0
2338 Male, age 61, both hemispheres 57.7
Periaquaductal grey, anterior
nTPM: 77.2
2502 Female, age 75, unknown 79.9
1947 Male, age 18, unknown 76.0
1795 Male, age 51, unknown 75.7
Periaquaductal grey, dorsal
nTPM: 68.5
1840 Male, age 53, unknown 72.0
1831 Male, age 72, unknown 68.7
2464 Female, age 72, unknown 66.9
2850 Male, age 76, both hemispheres 66.3
Periaquaductal grey, lateral
nTPM: 61.5
2053 Male, age 18, unknown 68.4
2140 Male, age 76, both hemispheres 58.9
2272 Male, age 74, both hemispheres 57.3
Pretectal area
nTPM: 77.9
1816 Male, age 51, unknown 97.9
1944 Female, age 72, unknown 96.7
2007 Male, age 72, unknown 88.6
1817 Female, age 42, unknown 86.7
1815 Male, age 53, unknown 82.0
2667 Female, age 75, unknown 72.4
2224 Female, age 72, unknown 70.8
2407 Male, age 75, both hemispheres 70.1
2825 Male, age 18, unknown 68.9
2316 Male, age 76, right hemisphere 62.2
2273 Male, age 74, both hemispheres 60.9
Red nucleus
nTPM: 69.8
2584 Male, age 75, left hemisphere 84.8
2588 Male, age 74, left hemisphere 73.8
1821 Female, age 72, unknown 73.4
2725 Female, age 75, unknown 73.3
2785 Male, age 18, unknown 70.7
2503 Female, age 72, unknown 69.7
1954 Female, age 42, unknown 68.9
1904 Male, age 53, unknown 66.1
2227 Male, age 72, unknown 66.0
2769 Male, age 72, unknown 66.0
1865 Male, age 51, unknown 63.4
2823 Male, age 76, right hemisphere 61.7
Substantia nigra
nTPM: 82.9
2241 Male, age 72, unknown 94.4
1889 Female, age 72, unknown 88.8
2583 Male, age 75, right hemisphere 88.6
1851 Male, age 51, unknown 85.2
1916 Female, age 42, unknown 83.7
2665 Male, age 74, both hemispheres 83.2
1941 Male, age 53, unknown 82.0
2409 Female, age 72, unknown 76.5
2699 Male, age 18, unknown 75.7
2590 Female, age 75, unknown 71.1
Superior colliculus
nTPM: 75.4
2087 Female, age 72, unknown 89.3
2664 Male, age 75, both hemispheres 88.7
2668 Female, age 75, unknown 83.8
2261 Male, age 18, unknown 80.3
1796 Male, age 53, unknown 75.9
1839 Male, age 51, unknown 70.1
2587 Male, age 74, left hemisphere 67.9
1913 Female, age 42, unknown 67.4
1995 Male, age 72, unknown 65.7
1895 Male, age 76, right hemisphere 65.3
Ventral tegmental area
nTPM: 74.8
1915 Female, age 42, unknown 78.2
2410 Female, age 72, unknown 76.3
1942 Male, age 51, unknown 75.7
2218 Male, age 76, both hemispheres 75.0
2223 Female, age 72, unknown 72.5
2021 Male, age 53, unknown 70.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 95.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 95.8
Samples: 139

Max nTPM: 224.8
Min nTPM: 57.6
Std nTPM: 24.6
Median nTPM: 93.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 224.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 166.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 162.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 160.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 159.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 148.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 142.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 139.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 137.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 137.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 133.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 164.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 164.1
FF:10158-103A5 76 years, female 164.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 105.3
Pig sample Sample description nTPM
Midbrain
nTPM: 105.3
Samples: 4

Max nTPM: 145.4
Min nTPM: 72.5
Sample A Female 72.5
Sample B Female 89.4
Sample C Male 145.4
Sample D Male 113.8
Periaqueductal gray
nTPM: 76.1
Samples: 3

Max nTPM: 81.7
Min nTPM: 69.1
Sample B Female 77.4
Sample C Male 81.7
Sample D Male 69.1
Substantia nigra
nTPM: 91.9
Samples: 4

Max nTPM: 112.2
Min nTPM: 57.2
Sample A Female 112.2
Sample B Female 89.7
Sample C Male 108.5
Sample D Male 57.2
Superior colliculi
nTPM: 104.5
Samples: 4

Max nTPM: 121.2
Min nTPM: 74.9
Sample A Female 116.9
Sample B Female 74.9
Sample C Male 121.2
Sample D Male 105.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 253.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 253.0
Samples: 4

Max nTPM: 267.3
Min nTPM: 238.4
Sample A Male 260.5
Sample B Male 267.3
Sample C Female 245.7
Sample D Female 238.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.4
1276 Antisense, RP_Baylor_103167, Mouse strain C57BL/6J (56 days, male) 4.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.