MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:158.5 nTPM
HPA:158.5 nTPM
GTEx:173.1 nTPM
FANTOM5:154.3 Scaled Tags Per Million
Pig:148.1 nTPM
Mouse:39.4 nTPM
Allen mouse:3.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 158.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 155.8
2666 Male, age 74, left hemisphere 166.2
2586 Male, age 75, left hemisphere 162.1
1827 Male, age 72, unknown 158.8
2019 Male, age 18, unknown 155.8
1833 Male, age 53, unknown 155.7
1870 Female, age 42, unknown 154.4
2219 Male, age 76, both hemispheres 153.7
2828 Female, age 72, unknown 151.4
2411 Female, age 72, unknown 150.3
1830 Male, age 51, unknown 149.9
Dorsal raphe nucleus
nTPM: 149.1
1828 Male, age 53, unknown 153.9
2750 Male, age 76, both hemispheres 151.6
2298 Female, age 72, unknown 150.3
2047 Male, age 72, unknown 145.1
2016 Female, age 72, unknown 144.8
Inferior colliculus
nTPM: 152.0
2849 Male, age 72, unknown 161.8
1848 Female, age 42, unknown 149.7
1890 Male, age 53, unknown 148.3
2097 Female, age 72, unknown 148.3
Median raphe nucleus
nTPM: 156.8
2220 Male, age 76, midline 156.8
Pedunculopontine tegmental nucleus
nTPM: 157.6
2334 Male, age 80, both hemispheres 164.2
2338 Male, age 61, both hemispheres 159.5
1921 Female, age 85, both hemispheres 149.1
Periaquaductal grey, anterior
nTPM: 152.9
1795 Male, age 51, unknown 157.5
2502 Female, age 75, unknown 153.4
1947 Male, age 18, unknown 147.8
Periaquaductal grey, dorsal
nTPM: 152.8
2850 Male, age 76, both hemispheres 157.9
1831 Male, age 72, unknown 156.1
1840 Male, age 53, unknown 151.5
2464 Female, age 72, unknown 145.7
Periaquaductal grey, lateral
nTPM: 146.8
2272 Male, age 74, both hemispheres 147.8
2053 Male, age 18, unknown 147.4
2140 Male, age 76, both hemispheres 145.3
Pretectal area
nTPM: 156.9
1817 Female, age 42, unknown 171.5
1816 Male, age 51, unknown 170.9
2007 Male, age 72, unknown 164.6
1944 Female, age 72, unknown 163.6
1815 Male, age 53, unknown 162.0
2667 Female, age 75, unknown 152.1
2407 Male, age 75, both hemispheres 151.1
2224 Female, age 72, unknown 150.5
2825 Male, age 18, unknown 150.1
2316 Male, age 76, right hemisphere 146.5
2273 Male, age 74, both hemispheres 143.4
Red nucleus
nTPM: 158.5
2725 Female, age 75, unknown 170.5
2503 Female, age 72, unknown 166.0
1821 Female, age 72, unknown 165.4
2785 Male, age 18, unknown 160.1
2588 Male, age 74, left hemisphere 158.5
2227 Male, age 72, unknown 156.9
2584 Male, age 75, left hemisphere 156.6
2769 Male, age 72, unknown 156.2
1865 Male, age 51, unknown 153.7
1904 Male, age 53, unknown 153.5
1954 Female, age 42, unknown 153.4
2823 Male, age 76, right hemisphere 151.2
Substantia nigra
nTPM: 152.6
1889 Female, age 72, unknown 161.4
2699 Male, age 18, unknown 161.2
2665 Male, age 74, both hemispheres 160.8
1916 Female, age 42, unknown 160.0
1851 Male, age 51, unknown 156.3
1941 Male, age 53, unknown 155.1
2583 Male, age 75, right hemisphere 152.1
2590 Female, age 75, unknown 145.6
2241 Male, age 72, unknown 138.3
2409 Female, age 72, unknown 135.9
Superior colliculus
nTPM: 156.7
2587 Male, age 74, left hemisphere 163.8
1913 Female, age 42, unknown 162.1
1796 Male, age 53, unknown 156.9
1995 Male, age 72, unknown 156.9
2261 Male, age 18, unknown 156.4
2668 Female, age 75, unknown 156.4
1895 Male, age 76, right hemisphere 155.1
2664 Male, age 75, both hemispheres 153.6
2087 Female, age 72, unknown 152.8
1839 Male, age 51, unknown 152.4
Ventral tegmental area
nTPM: 152.6
2223 Female, age 72, unknown 158.2
1915 Female, age 42, unknown 157.2
2218 Male, age 76, both hemispheres 157.2
2410 Female, age 72, unknown 149.7
2021 Male, age 53, unknown 147.6
1942 Male, age 51, unknown 145.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 173.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 173.1
Samples: 139

Max nTPM: 378.2
Min nTPM: 73.1
Std nTPM: 48.3
Median nTPM: 166.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 378.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 331.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 311.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 294.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 268.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 253.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 248.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 241.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 240.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 238.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 237.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 154.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 154.3
FF:10158-103A5 76 years, female 154.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 148.1
Pig sample Sample description nTPM
Midbrain
nTPM: 145.9
Samples: 4

Max nTPM: 183.5
Min nTPM: 118.1
Sample A Female 183.5
Sample B Female 122.0
Sample C Male 159.9
Sample D Male 118.1
Periaqueductal gray
nTPM: 113.7
Samples: 3

Max nTPM: 115.6
Min nTPM: 111.1
Sample B Female 114.4
Sample C Male 115.6
Sample D Male 111.1
Substantia nigra
nTPM: 128.1
Samples: 4

Max nTPM: 173.7
Min nTPM: 105.2
Sample A Female 173.7
Sample B Female 119.3
Sample C Male 114.1
Sample D Male 105.2
Superior colliculi
nTPM: 148.1
Samples: 4

Max nTPM: 186.2
Min nTPM: 117.3
Sample A Female 186.2
Sample B Female 117.3
Sample C Male 149.4
Sample D Male 139.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.4
Samples: 4

Max nTPM: 44.7
Min nTPM: 35.6
Sample A Male 44.7
Sample B Male 37.5
Sample C Female 35.6
Sample D Female 39.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
67814203 Antisense, RP_040920_01_F03, Mouse strain C57BL/6J (56 days, male) 3.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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