BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:0.7 nTPM
HPA:0.7 nTPM
GTEx:0.6 nTPM
FANTOM5:3.3 Scaled Tags Per Million
Pig:2.4 nTPM
Mouse:2.1 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.6
1854 Male, age 80, left hemisphere 0.9
2289 Male, age 61, right hemisphere 0.9
1857 Female, age 85, left hemisphere 0.8
2290 Female, age 72, unknown 0.7
2288 Male, age 75, left hemisphere 0.5
2846 Female, age 79, unknown 0.4
1781 Male, age 74, unknown 0.3
2481 Female, age 94, left hemisphere 0.1
Claustrum
nTPM: 0.7
2284 Female, age 91, both hemispheres 1.2
2292 Female, age 85, both hemispheres 0.9
1956 Male, age 74, unknown 0.8
2196 Female, age 79, unknown 0.8
2198 Male, age 80, both hemispheres 0.6
2392 Female, age 94, both hemispheres 0.6
2568 Male, age 61, both hemispheres 0.5
2645 Female, age 72, unknown 0.5
2491 Male, age 75, both hemispheres 0.4
Globus pallidus, externus
nTPM: 0.6
2395 Male, age 75, both hemispheres 0.8
2567 Female, age 72, unknown 0.8
1996 Male, age 80, right hemisphere 0.5
2772 Female, age 79, unknown 0.4
2646 Male, age 61, right hemisphere 0.3
Globus pallidus, internus
nTPM: 0.7
2111 Female, age 85, right hemisphere 1.2
2566 Female, age 72, unknown 1.0
1818 Male, age 74, unknown 0.9
2037 Male, age 80, right hemisphere 0.7
2287 Male, age 75, right hemisphere 0.6
2778 Female, age 91, both hemispheres 0.6
2483 Female, age 94, right hemisphere 0.0
Nucleus accumbens
nTPM: 0.7
2391 Female, age 94, left hemisphere 0.9
2732 Male, age 80, right hemisphere 0.9
1806 Female, age 85, left hemisphere 0.8
2824 Male, age 61, right hemisphere 0.8
1856 Female, age 91, right hemisphere 0.7
2698 Female, age 72, unknown 0.6
1783 Male, age 74, unknown 0.5
2286 Male, age 75, left hemisphere 0.5
Nucleus basalis of Meynert
nTPM: 0.6
2393 Male, age 80, right hemisphere 1.1
2484 Female, age 94, left hemisphere 0.6
2821 Male, age 75, both hemispheres 0.6
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 0.3
1979 Male, age 74, unknown 0.4
2029 Male, age 61, right hemisphere 0.4
2775 Male, age 80, right hemisphere 0.4
2195 Female, age 85, both hemispheres 0.2
1812 Female, age 91, both hemispheres 0.0
Olfactory tubercle
nTPM: 0.4
1998 Female, age 91, both hemispheres 0.7
2856 Male, age 75, right hemisphere 0.6
2487 Female, age 94, left hemisphere 0.2
1846 Male, age 80, right hemisphere 0.1
Putamen
nTPM: 0.6
2489 Female, age 72, unknown 1.2
1838 Male, age 80, right hemisphere 0.8
1937 Female, age 91, right hemisphere 0.8
2466 Female, age 79, unknown 0.8
2482 Female, age 94, left hemisphere 0.3
2647 Male, age 75, left hemisphere 0.3
1829 Male, age 74, unknown 0.2
Septal nuclei
nTPM: 0.4
2394 Male, age 61, left hemisphere 0.8
1960 Male, age 74, unknown 0.6
2199 Male, age 80, right hemisphere 0.5
2009 Female, age 91, both hemispheres 0.3
2059 Female, age 85, both hemispheres 0.3
2031 Female, age 72, unknown 0.0
2629 Female, age 94, right hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.6
Samples: 246

Max nTPM: 3.2
Min nTPM: 0.0
Std nTPM: 0.3
Median nTPM: 0.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 3.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 2.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 2.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 1.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1.2
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.6
Samples: 246

Max nTPM: 2.1
Min nTPM: 0.0
Std nTPM: 0.3
Median nTPM: 0.6
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 2.1
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 1.8
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 1.6
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 1.6
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 1.5
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 1.5
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 1.4
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 1.4
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 1.4
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 1.4
GTEX-13X6K-0011-R6a-SM-5P9K6 60-69 years, female 1.3
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 0.5
Samples: 205

Max nTPM: 2.2
Min nTPM: 0.0
Std nTPM: 0.3
Median nTPM: 0.5
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 2.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 1.8
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 1.7
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 1.5
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 1.5
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 1.3
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 1.2
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 1.1
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 1.1
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 1.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 1.1
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.6
FF:10164-103B2 76 years, female 2.6
Globus pallidus
Scaled Tags Per Million: 2.9
FF:10161-103A8 76 years, female 3.6
FF:10175-103C4 60 years, female 2.3
Nucleus accumbens
Scaled Tags Per Million: 2.2
FF:10037-101F1 23-56 years, mixed 2.2
Putamen
Scaled Tags Per Million: 3.3
FF:10176-103C5 60 years, female 3.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.4
Pig sample Sample description nTPM
Caudate
nTPM: 1.4
Samples: 4

Max nTPM: 1.6
Min nTPM: 1.3
Sample A Female 1.6
Sample B Female 1.3
Sample C Male 1.3
Sample D Male 1.4
Putamen
nTPM: 2.3
Samples: 4

Max nTPM: 3.6
Min nTPM: 1.5
Sample A Female 3.6
Sample B Female 1.5
Sample C Male 2.3
Sample D Male 1.6
Septum
nTPM: 2.4
Samples: 4

Max nTPM: 2.7
Min nTPM: 1.7
Sample A Female 2.7
Sample B Female 1.7
Sample C Male 2.7
Sample D Male 2.6
Ventral pallidum
nTPM: 1.9
Samples: 4

Max nTPM: 2.4
Min nTPM: 1.2
Sample A Female 1.8
Sample B Female 1.2
Sample C Male 2.4
Sample D Male 2.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 2.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.2
Samples: 4

Max nTPM: 2.7
Min nTPM: 1.0
Sample A Male 2.6
Sample B Male 2.3
Sample C Female 2.7
Sample D Female 1.0
Septum
nTPM: 1.5
Samples: 4

Max nTPM: 1.9
Min nTPM: 1.1
Sample A Male 1.1
Sample B Male 1.9
Sample C Female 1.4
Sample D Female 1.5
Ventral forebrain
nTPM: 1.2
Samples: 4

Max nTPM: 2.2
Min nTPM: 0.7
Sample A Male 1.2
Sample B Male 0.7
Sample C Female 0.7
Sample D Female 2.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
74635824 Antisense, RP_060215_04_D12, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
74635824 Antisense, RP_060215_04_D12, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.