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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:44.3 nTPM
HPA:44.3 nTPM
GTEx:76.8 nTPM
FANTOM5:95.3 Scaled Tags Per Million
Pig:45.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 44.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 41.9
2194 Female, age 79, both hemispheres 45.1
1981 Female, age 72, midline 43.6
2048 Male, age 55, midline 42.1
2816 Male, age 47, midline 41.4
2565 Male, age 75, midline 37.2
Cervical spinal cord, dorsal horn
nTPM: 43.7
2296 Male, age 66, both hemispheres 51.0
2173 Female, age 72, unknown 46.5
2297 Male, age 75, both hemispheres 41.9
2069 Male, age 47, both hemispheres 41.7
2721 Male, age 90, both hemispheres 41.0
1877 Male, age 55, unknown 40.1
Cervical spinal cord, ventral horn
nTPM: 44.3
2098 Female, age 72, unknown 45.8
2480 Male, age 75, both hemispheres 44.9
2809 Male, age 90, both hemispheres 44.8
2295 Male, age 66, both hemispheres 44.7
2820 Female, age 79, both hemispheres 43.8
2068 Male, age 55, unknown 42.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 76.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 76.8
Samples: 159

Max nTPM: 115.4
Min nTPM: 46.4
Std nTPM: 14.8
Median nTPM: 78.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 115.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 110.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 109.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 107.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 104.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 104.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 103.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 103.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 102.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 101.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 99.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 99.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 99.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 98.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 97.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 97.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 96.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 95.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 95.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 94.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 94.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 93.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 93.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 92.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 92.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 91.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 91.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 90.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 90.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 90.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 89.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 89.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 89.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 89.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 88.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 88.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 88.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 87.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 87.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 87.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 87.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 87.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 87.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 86.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 86.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 86.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 84.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 84.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 83.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 83.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 82.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 82.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 82.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 82.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 81.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 81.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 81.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 80.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 80.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 80.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 80.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 80.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 80.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 80.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 80.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 79.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 79.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 79.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 79.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 79.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 79.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 79.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 79.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 79.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 78.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 78.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 78.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 78.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 78.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 78.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 78.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 77.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 76.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 76.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 76.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 76.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 75.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 75.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 75.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 75.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 75.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 75.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 75.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 74.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 74.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 74.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 74.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 73.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 73.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 72.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 71.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 71.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 71.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 71.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 70.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 70.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 69.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 69.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 68.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 68.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 67.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 67.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 67.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 66.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 66.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 66.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 66.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 66.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 66.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 66.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 66.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 65.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 65.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 63.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 63.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 63.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 63.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 63.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 62.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 61.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 61.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 61.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 60.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 60.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 60.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 59.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 59.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 58.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 58.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 57.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 57.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 57.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 56.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 55.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 55.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 55.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 55.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 53.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 53.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 53.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 52.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 51.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 51.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 51.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 51.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 50.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 48.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 48.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 46.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 95.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 95.3
FF:10159-103A6 76 years, female 102.7
FF:10181-103D1 60 years, female 88.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 45.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 37.9
Samples: 4

Max nTPM: 39.0
Min nTPM: 36.6
Sample A Female 36.6
Sample B Female 38.4
Sample C Male 39.0
Sample D Male 37.4
Ventral spinal cord
nTPM: 45.1
Samples: 4

Max nTPM: 48.5
Min nTPM: 40.0
Sample A Female 45.6
Sample B Female 46.4
Sample C Male 48.5
Sample D Male 40.0

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