MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:18.3 nTPM
HPA:18.3 nTPM
GTEx:19.8 nTPM
FANTOM5:32.1 Scaled Tags Per Million
Pig:10.2 nTPM
Mouse:14.1 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.6
2019 Male, age 18, unknown 19.8
1827 Male, age 72, unknown 18.4
2828 Female, age 72, unknown 17.3
2411 Female, age 72, unknown 17.2
2666 Male, age 74, left hemisphere 16.4
1870 Female, age 42, unknown 16.1
2219 Male, age 76, both hemispheres 15.8
2586 Male, age 75, left hemisphere 15.7
1833 Male, age 53, unknown 15.0
1830 Male, age 51, unknown 14.0
Dorsal raphe nucleus
nTPM: 17.8
2298 Female, age 72, unknown 19.9
2750 Male, age 76, both hemispheres 18.2
2047 Male, age 72, unknown 18.1
1828 Male, age 53, unknown 16.5
2016 Female, age 72, unknown 16.1
Inferior colliculus
nTPM: 16.9
2097 Female, age 72, unknown 19.7
1848 Female, age 42, unknown 16.9
1890 Male, age 53, unknown 16.6
2849 Male, age 72, unknown 14.6
Median raphe nucleus
nTPM: 17.9
2220 Male, age 76, midline 17.9
Pedunculopontine tegmental nucleus
nTPM: 15.9
1921 Female, age 85, both hemispheres 16.9
2334 Male, age 80, both hemispheres 16.6
2338 Male, age 61, both hemispheres 14.2
Periaquaductal grey, anterior
nTPM: 17.5
2502 Female, age 75, unknown 18.1
1947 Male, age 18, unknown 17.4
1795 Male, age 51, unknown 17.2
Periaquaductal grey, dorsal
nTPM: 15.6
1840 Male, age 53, unknown 16.8
1831 Male, age 72, unknown 16.1
2464 Female, age 72, unknown 15.8
2850 Male, age 76, both hemispheres 13.9
Periaquaductal grey, lateral
nTPM: 16.6
2272 Male, age 74, both hemispheres 17.4
2053 Male, age 18, unknown 16.4
2140 Male, age 76, both hemispheres 16.0
Pretectal area
nTPM: 18.3
1816 Male, age 51, unknown 20.8
2007 Male, age 72, unknown 20.6
1944 Female, age 72, unknown 19.7
1817 Female, age 42, unknown 19.6
2667 Female, age 75, unknown 19.5
1815 Male, age 53, unknown 18.2
2273 Male, age 74, both hemispheres 17.6
2224 Female, age 72, unknown 17.5
2316 Male, age 76, right hemisphere 16.3
2407 Male, age 75, both hemispheres 15.7
2825 Male, age 18, unknown 15.7
Red nucleus
nTPM: 16.8
2785 Male, age 18, unknown 18.7
2725 Female, age 75, unknown 17.8
1821 Female, age 72, unknown 17.7
2823 Male, age 76, right hemisphere 17.7
1865 Male, age 51, unknown 17.0
1954 Female, age 42, unknown 17.0
1904 Male, age 53, unknown 16.8
2588 Male, age 74, left hemisphere 16.4
2584 Male, age 75, left hemisphere 15.8
2769 Male, age 72, unknown 15.7
2227 Male, age 72, unknown 15.6
2503 Female, age 72, unknown 15.1
Substantia nigra
nTPM: 17.9
1916 Female, age 42, unknown 20.8
2241 Male, age 72, unknown 19.8
1941 Male, age 53, unknown 19.6
1851 Male, age 51, unknown 19.4
1889 Female, age 72, unknown 19.3
2583 Male, age 75, right hemisphere 17.4
2665 Male, age 74, both hemispheres 17.0
2590 Female, age 75, unknown 15.8
2409 Female, age 72, unknown 15.3
2699 Male, age 18, unknown 15.0
Superior colliculus
nTPM: 16.4
2087 Female, age 72, unknown 19.3
1796 Male, age 53, unknown 17.7
1895 Male, age 76, right hemisphere 17.6
2261 Male, age 18, unknown 17.2
1839 Male, age 51, unknown 16.3
2587 Male, age 74, left hemisphere 16.1
2668 Female, age 75, unknown 15.7
2664 Male, age 75, both hemispheres 14.9
1913 Female, age 42, unknown 14.8
1995 Male, age 72, unknown 14.7
Ventral tegmental area
nTPM: 16.9
1915 Female, age 42, unknown 18.3
2410 Female, age 72, unknown 18.1
2218 Male, age 76, both hemispheres 17.2
1942 Male, age 51, unknown 16.2
2223 Female, age 72, unknown 15.8
2021 Male, age 53, unknown 15.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.8
Samples: 139

Max nTPM: 38.2
Min nTPM: 10.5
Std nTPM: 5.3
Median nTPM: 19.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 38.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 36.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 34.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 33.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 31.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 30.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 30.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 29.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 29.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 29.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 29.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.1
FF:10158-103A5 76 years, female 32.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.2
Pig sample Sample description nTPM
Midbrain
nTPM: 9.8
Samples: 4

Max nTPM: 11.0
Min nTPM: 8.0
Sample A Female 10.0
Sample B Female 8.0
Sample C Male 11.0
Sample D Male 10.2
Periaqueductal gray
nTPM: 7.9
Samples: 3

Max nTPM: 8.6
Min nTPM: 7.4
Sample B Female 7.7
Sample C Male 8.6
Sample D Male 7.4
Substantia nigra
nTPM: 8.9
Samples: 4

Max nTPM: 10.2
Min nTPM: 7.8
Sample A Female 10.2
Sample B Female 7.8
Sample C Male 9.1
Sample D Male 8.4
Superior colliculi
nTPM: 10.2
Samples: 4

Max nTPM: 12.4
Min nTPM: 8.1
Sample A Female 10.7
Sample B Female 8.1
Sample C Male 12.4
Sample D Male 9.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.1
Samples: 4

Max nTPM: 16.6
Min nTPM: 11.7
Sample A Male 16.6
Sample B Male 11.7
Sample C Female 15.0
Sample D Female 12.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
69015404 Antisense, RP_050310_02_H08, Mouse strain C57BL/6J (56 days, male) 3.0
72129246 Antisense, RP_051017_03_E06, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.