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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:993.4 nTPM
HPA:993.4 nTPM
GTEx:1515.1 nTPM
FANTOM5:2034.1 Scaled Tags Per Million
Pig:3050.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 993.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 903.3
2565 Male, age 75, midline 966.4
2194 Female, age 79, both hemispheres 942.2
1981 Female, age 72, midline 912.9
2816 Male, age 47, midline 860.2
2048 Male, age 55, midline 834.8
Cervical spinal cord, dorsal horn
nTPM: 933.1
2296 Male, age 66, both hemispheres 1091.7
2173 Female, age 72, unknown 1035.7
2069 Male, age 47, both hemispheres 972.6
2297 Male, age 75, both hemispheres 859.9
1877 Male, age 55, unknown 843.6
2721 Male, age 90, both hemispheres 794.8
Cervical spinal cord, ventral horn
nTPM: 993.4
2480 Male, age 75, both hemispheres 1195.5
2068 Male, age 55, unknown 1014.1
2820 Female, age 79, both hemispheres 961.4
2809 Male, age 90, both hemispheres 957.9
2295 Male, age 66, both hemispheres 916.0
2098 Female, age 72, unknown 915.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1515.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1515.1
Samples: 159

Max nTPM: 2784.2
Min nTPM: 522.3
Std nTPM: 449.0
Median nTPM: 1463.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 2784.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 2656.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2533.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2477.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 2446.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 2428.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 2295.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 2284.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 2246.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 2210.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2195.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 2178.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 2176.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2152.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 2136.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 2097.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 2097.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 2095.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 2063.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 2057.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 2053.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 2038.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2031.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 2011.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 2007.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2002.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1988.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1982.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1974.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1966.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1939.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1912.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1904.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1900.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1895.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1888.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1862.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1858.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1850.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1839.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1813.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1808.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1806.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1796.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1789.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1787.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1779.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1778.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1771.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1768.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1766.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1749.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1741.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1737.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1721.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1682.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1678.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1665.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1660.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1652.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1633.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1631.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1589.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1575.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1566.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1555.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1544.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1539.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1538.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1536.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1527.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1513.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1508.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1507.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1498.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1497.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1496.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1496.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1470.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1463.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1460.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1459.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1452.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1448.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1448.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1445.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1440.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1440.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1435.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1408.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1392.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1391.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1390.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1375.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1375.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1367.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1362.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1357.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1356.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1344.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1340.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1329.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1312.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1291.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 1288.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1283.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1274.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1270.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1264.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1254.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1251.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1249.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1245.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1202.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1195.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1178.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1178.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1176.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1170.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1167.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1166.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1165.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1161.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1159.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1157.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 1139.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1122.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1121.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1121.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1112.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1095.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1090.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1075.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1061.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1036.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1021.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1017.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1011.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 998.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 994.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 973.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 969.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 961.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 947.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 943.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 926.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 914.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 900.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 847.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 844.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 838.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 838.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 807.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 797.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 782.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 778.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 685.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 556.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 522.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2034.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 2034.1
FF:10181-103D1 60 years, female 2126.7
FF:10159-103A6 76 years, female 1941.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3050.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 2091.3
Samples: 4

Max nTPM: 2365.5
Min nTPM: 1981.7
Sample A Female 1981.7
Sample B Female 2033.3
Sample C Male 2365.5
Sample D Male 1984.6
Ventral spinal cord
nTPM: 3050.6
Samples: 4

Max nTPM: 3598.9
Min nTPM: 2433.5
Sample A Female 2985.0
Sample B Female 3185.1
Sample C Male 3598.9
Sample D Male 2433.5

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