BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:7.5 nTPM
HPA:7.5 nTPM
GTEx:7.4 nTPM
FANTOM5:10.8 Scaled Tags Per Million
Pig:3.8 nTPM
Mouse:8.1 nTPM
Allen mouse:0.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 7.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 6.9
2481 Female, age 94, left hemisphere 9.1
2289 Male, age 61, right hemisphere 8.4
2288 Male, age 75, left hemisphere 7.4
1781 Male, age 74, unknown 7.1
2846 Female, age 79, unknown 6.1
2290 Female, age 72, unknown 6.0
1857 Female, age 85, left hemisphere 5.5
1854 Male, age 80, left hemisphere 5.4
Claustrum
nTPM: 6.3
2198 Male, age 80, both hemispheres 7.2
2645 Female, age 72, unknown 6.9
2284 Female, age 91, both hemispheres 6.8
1956 Male, age 74, unknown 6.4
2491 Male, age 75, both hemispheres 6.4
2196 Female, age 79, unknown 6.2
2392 Female, age 94, both hemispheres 5.8
2292 Female, age 85, both hemispheres 5.6
2568 Male, age 61, both hemispheres 5.5
Globus pallidus, externus
nTPM: 7.5
2646 Male, age 61, right hemisphere 9.5
2772 Female, age 79, unknown 8.7
2395 Male, age 75, both hemispheres 6.7
2567 Female, age 72, unknown 6.6
1996 Male, age 80, right hemisphere 5.8
Globus pallidus, internus
nTPM: 6.4
1818 Male, age 74, unknown 6.9
2566 Female, age 72, unknown 6.6
2778 Female, age 91, both hemispheres 6.5
2287 Male, age 75, right hemisphere 6.4
2037 Male, age 80, right hemisphere 6.1
2111 Female, age 85, right hemisphere 6.1
2483 Female, age 94, right hemisphere 6.1
Nucleus accumbens
nTPM: 6.2
2286 Male, age 75, left hemisphere 8.2
2391 Female, age 94, left hemisphere 7.7
2698 Female, age 72, unknown 5.9
1783 Male, age 74, unknown 5.8
1806 Female, age 85, left hemisphere 5.7
2732 Male, age 80, right hemisphere 5.6
1856 Female, age 91, right hemisphere 5.5
2824 Male, age 61, right hemisphere 5.3
Nucleus basalis of Meynert
nTPM: 7.0
2569 Male, age 61, both hemispheres 8.5
2821 Male, age 75, both hemispheres 8.4
2484 Female, age 94, left hemisphere 5.7
2393 Male, age 80, right hemisphere 5.3
Nucleus of the diagonal band
nTPM: 6.2
2195 Female, age 85, both hemispheres 8.1
2775 Male, age 80, right hemisphere 6.4
1812 Female, age 91, both hemispheres 6.0
1979 Male, age 74, unknown 6.0
2029 Male, age 61, right hemisphere 4.3
Olfactory tubercle
nTPM: 6.1
1998 Female, age 91, both hemispheres 6.6
2856 Male, age 75, right hemisphere 6.5
1846 Male, age 80, right hemisphere 6.3
2487 Female, age 94, left hemisphere 5.1
Putamen
nTPM: 5.9
2482 Female, age 94, left hemisphere 6.8
2647 Male, age 75, left hemisphere 6.7
2489 Female, age 72, unknown 6.2
2466 Female, age 79, unknown 5.9
1829 Male, age 74, unknown 5.4
1937 Female, age 91, right hemisphere 5.3
1838 Male, age 80, right hemisphere 5.1
Septal nuclei
nTPM: 6.9
2059 Female, age 85, both hemispheres 8.2
1960 Male, age 74, unknown 7.9
2009 Female, age 91, both hemispheres 7.4
2199 Male, age 80, right hemisphere 6.8
2031 Female, age 72, unknown 6.5
2629 Female, age 94, right hemisphere 6.2
2394 Male, age 61, left hemisphere 5.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 7.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 7.4
Samples: 246

Max nTPM: 161.9
Min nTPM: 0.7
Std nTPM: 12.3
Median nTPM: 4.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 161.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 64.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 50.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 48.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 43.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 33.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 26.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 23.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 23.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 23.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 18.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.6
Samples: 246

Max nTPM: 109.7
Min nTPM: 0.4
Std nTPM: 12.2
Median nTPM: 3.8
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 109.7
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 95.0
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 93.6
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 56.4
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 50.2
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 37.8
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 28.6
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 27.0
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 26.2
GTEX-11ONC-0011-R6a-SM-DO12A 60-69 years, male 25.8
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 25.1
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Brain - Putamen (basal ganglia)
Average nTPM: 7.4
Samples: 205

Max nTPM: 100.1
Min nTPM: 0.3
Std nTPM: 11.0
Median nTPM: 4.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 100.1
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 77.8
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 65.0
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 51.5
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 38.0
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 31.6
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 30.6
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 27.2
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 24.2
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 21.0
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 20.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 4.8
FF:10164-103B2 76 years, female 4.8
Globus pallidus
Scaled Tags Per Million: 5.1
FF:10175-103C4 60 years, female 5.5
FF:10161-103A8 76 years, female 4.6
Nucleus accumbens
Scaled Tags Per Million: 10.8
FF:10037-101F1 23-56 years, mixed 10.8
Putamen
Scaled Tags Per Million: 4.2
FF:10176-103C5 60 years, female 4.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.8
Pig sample Sample description nTPM
Caudate
nTPM: 2.8
Samples: 4

Max nTPM: 3.6
Min nTPM: 1.9
Sample A Female 1.9
Sample B Female 3.6
Sample C Male 2.7
Sample D Male 2.8
Putamen
nTPM: 2.8
Samples: 4

Max nTPM: 3.7
Min nTPM: 1.9
Sample A Female 3.7
Sample B Female 2.6
Sample C Male 2.8
Sample D Male 1.9
Septum
nTPM: 3.8
Samples: 4

Max nTPM: 4.8
Min nTPM: 2.6
Sample A Female 4.8
Sample B Female 2.6
Sample C Male 4.3
Sample D Male 3.3
Ventral pallidum
nTPM: 2.4
Samples: 4

Max nTPM: 3.6
Min nTPM: 1.7
Sample A Female 1.7
Sample B Female 3.6
Sample C Male 2.3
Sample D Male 1.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 8.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 4.7
Samples: 4

Max nTPM: 5.6
Min nTPM: 3.4
Sample A Male 4.4
Sample B Male 5.3
Sample C Female 3.4
Sample D Female 5.6
Septum
nTPM: 8.1
Samples: 4

Max nTPM: 9.2
Min nTPM: 7.6
Sample A Male 7.6
Sample B Male 9.2
Sample C Female 7.7
Sample D Female 7.9
Ventral forebrain
nTPM: 6.1
Samples: 4

Max nTPM: 7.3
Min nTPM: 5.2
Sample A Male 6.3
Sample B Male 5.7
Sample C Female 7.3
Sample D Female 5.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
71232703 Antisense, RP_050428_04_C03, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.4
71232703 Antisense, RP_050428_04_C03, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

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