MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:33.8 nTPM
HPA:33.8 nTPM
GTEx:30.9 nTPM
FANTOM5:43.0 Scaled Tags Per Million
Pig:12.4 nTPM
Mouse:18.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.9
2019 Male, age 18, unknown 41.4
2586 Male, age 75, left hemisphere 33.8
2828 Female, age 72, unknown 29.7
2666 Male, age 74, left hemisphere 29.3
1833 Male, age 53, unknown 28.4
1827 Male, age 72, unknown 28.1
2411 Female, age 72, unknown 28.0
1870 Female, age 42, unknown 27.1
1830 Male, age 51, unknown 26.8
2219 Male, age 76, both hemispheres 26.4
Dorsal raphe nucleus
nTPM: 29.1
2298 Female, age 72, unknown 30.2
2750 Male, age 76, both hemispheres 29.4
1828 Male, age 53, unknown 29.3
2047 Male, age 72, unknown 28.7
2016 Female, age 72, unknown 27.9
Inferior colliculus
nTPM: 28.5
2097 Female, age 72, unknown 29.9
1890 Male, age 53, unknown 29.3
1848 Female, age 42, unknown 28.0
2849 Male, age 72, unknown 26.8
Median raphe nucleus
nTPM: 28.4
2220 Male, age 76, midline 28.4
Pedunculopontine tegmental nucleus
nTPM: 29.0
2334 Male, age 80, both hemispheres 29.7
1921 Female, age 85, both hemispheres 29.2
2338 Male, age 61, both hemispheres 28.2
Periaquaductal grey, anterior
nTPM: 28.4
2502 Female, age 75, unknown 30.3
1795 Male, age 51, unknown 28.2
1947 Male, age 18, unknown 26.9
Periaquaductal grey, dorsal
nTPM: 28.0
2464 Female, age 72, unknown 28.8
1840 Male, age 53, unknown 27.9
1831 Male, age 72, unknown 27.8
2850 Male, age 76, both hemispheres 27.5
Periaquaductal grey, lateral
nTPM: 26.5
2272 Male, age 74, both hemispheres 28.0
2140 Male, age 76, both hemispheres 26.3
2053 Male, age 18, unknown 25.2
Pretectal area
nTPM: 33.8
1816 Male, age 51, unknown 43.0
1817 Female, age 42, unknown 42.5
2007 Male, age 72, unknown 42.2
1944 Female, age 72, unknown 40.5
1815 Male, age 53, unknown 37.6
2667 Female, age 75, unknown 30.1
2273 Male, age 74, both hemispheres 28.8
2407 Male, age 75, both hemispheres 28.3
2224 Female, age 72, unknown 27.2
2316 Male, age 76, right hemisphere 26.4
2825 Male, age 18, unknown 25.3
Red nucleus
nTPM: 30.7
2785 Male, age 18, unknown 38.9
2503 Female, age 72, unknown 32.5
1821 Female, age 72, unknown 31.1
2823 Male, age 76, right hemisphere 30.7
2588 Male, age 74, left hemisphere 30.5
2584 Male, age 75, left hemisphere 30.2
1954 Female, age 42, unknown 30.1
1904 Male, age 53, unknown 29.6
2227 Male, age 72, unknown 29.2
2769 Male, age 72, unknown 29.1
1865 Male, age 51, unknown 28.8
2725 Female, age 75, unknown 28.0
Substantia nigra
nTPM: 29.2
1889 Female, age 72, unknown 34.7
2665 Male, age 74, both hemispheres 31.3
2590 Female, age 75, unknown 31.1
2583 Male, age 75, right hemisphere 29.5
1941 Male, age 53, unknown 29.4
2409 Female, age 72, unknown 29.3
1851 Male, age 51, unknown 28.4
2241 Male, age 72, unknown 27.3
1916 Female, age 42, unknown 26.5
2699 Male, age 18, unknown 24.9
Superior colliculus
nTPM: 30.4
2087 Female, age 72, unknown 35.4
1995 Male, age 72, unknown 32.6
2668 Female, age 75, unknown 31.3
2261 Male, age 18, unknown 31.1
1913 Female, age 42, unknown 31.0
2664 Male, age 75, both hemispheres 30.4
2587 Male, age 74, left hemisphere 28.7
1796 Male, age 53, unknown 28.2
1895 Male, age 76, right hemisphere 28.1
1839 Male, age 51, unknown 27.3
Ventral tegmental area
nTPM: 28.1
1942 Male, age 51, unknown 29.7
2410 Female, age 72, unknown 29.4
2223 Female, age 72, unknown 28.3
2218 Male, age 76, both hemispheres 27.6
2021 Male, age 53, unknown 27.1
1915 Female, age 42, unknown 26.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.9
Samples: 139

Max nTPM: 63.8
Min nTPM: 14.6
Std nTPM: 8.3
Median nTPM: 29.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 63.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 55.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 50.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 48.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 48.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 48.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 47.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 46.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 46.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 46.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 46.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.0
FF:10158-103A5 76 years, female 43.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.4
Pig sample Sample description nTPM
Midbrain
nTPM: 9.9
Samples: 4

Max nTPM: 16.4
Min nTPM: 6.3
Sample A Female 6.3
Sample B Female 8.2
Sample C Male 16.4
Sample D Male 8.8
Periaqueductal gray
nTPM: 8.5
Samples: 3

Max nTPM: 9.1
Min nTPM: 7.9
Sample B Female 8.5
Sample C Male 9.1
Sample D Male 7.9
Substantia nigra
nTPM: 8.6
Samples: 4

Max nTPM: 10.3
Min nTPM: 5.3
Sample A Female 9.9
Sample B Female 10.3
Sample C Male 8.7
Sample D Male 5.3
Superior colliculi
nTPM: 12.4
Samples: 4

Max nTPM: 18.9
Min nTPM: 10.1
Sample A Female 10.3
Sample B Female 10.1
Sample C Male 18.9
Sample D Male 10.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.1
Samples: 4

Max nTPM: 19.3
Min nTPM: 17.5
Sample A Male 17.5
Sample B Male 17.5
Sample C Female 19.3
Sample D Female 17.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
641524 Antisense, RP_040914_01_D12, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.