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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:67.3 nTPM
GTEx:87.6 nTPM
FANTOM5:156.9 Scaled Tags Per Million
Pig:34.2 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 67.3
Sample id Sample description nTPM
Putamen
nTPM: 67.3
2647 Male, age 75, left hemisphere 81.3
1829 Male, age 74, unknown 69.5
2489 Female, age 72, unknown 69.0
2482 Female, age 94, left hemisphere 68.5
2466 Female, age 79, unknown 64.5
1838 Male, age 80, right hemisphere 60.6
1937 Female, age 91, right hemisphere 57.9

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 87.6
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 87.6
Samples: 205

Max nTPM: 307.4
Min nTPM: 6.3
Std nTPM: 56.2
Median nTPM: 72.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 307.4
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 269.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 263.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 252.9
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 248.2
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 238.2
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 232.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 230.2
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 222.4
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 209.4
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 204.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 196.0
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 192.5
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 187.8
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 180.4
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 179.5
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 172.1
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 166.6
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 166.6
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 166.1
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 164.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 161.7
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 161.1
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 158.9
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 154.6
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 153.9
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 151.4
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 151.0
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 145.8
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 145.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 142.1
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 141.9
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 139.7
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 135.0
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 135.0
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 132.0
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 129.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 127.4
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 127.0
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 125.4
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 125.4
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 125.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 124.8
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 122.8
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 121.6
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 121.1
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 120.6
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 118.4
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 117.1
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 117.0
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 115.9
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 115.8
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 113.0
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 111.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 111.3
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 111.1
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 107.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 107.7
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 105.7
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 105.5
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 103.6
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 102.0
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 101.7
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 101.2
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 101.2
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 101.1
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 100.6
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 100.4
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 98.9
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 98.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 98.2
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 97.6
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 97.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 96.8
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 96.1
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 94.5
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 94.2
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 93.7
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 93.3
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 93.2
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 91.8
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 90.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 88.9
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 87.5
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 87.2
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 87.0
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 85.7
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 85.1
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 83.9
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 83.7
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 81.5
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 81.0
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 79.6
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 77.4
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 76.3
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 76.0
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 75.1
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 74.1
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 73.4
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 73.0
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 72.3
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 72.3
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 72.2
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 71.8
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 71.5
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 71.3
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 70.9
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 70.1
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 70.1
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 69.3
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 69.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 68.6
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 67.0
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 66.4
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 65.4
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 65.3
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 65.0
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 64.0
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 63.7
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 63.6
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 62.4
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 61.5
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 61.4
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 61.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 61.1
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 60.5
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 60.5
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 60.3
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 59.6
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 58.7
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 58.0
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 58.0
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 57.9
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 56.8
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 56.5
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 56.2
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 56.2
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 55.7
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 55.2
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 54.6
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 54.2
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 53.8
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 53.3
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 52.9
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 52.9
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 52.3
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 51.5
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 50.9
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 50.5
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 50.0
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 48.8
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 48.0
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 47.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 46.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 46.6
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 46.4
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 45.5
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 45.1
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 45.0
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 44.6
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 43.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 42.7
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 42.5
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 42.2
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 42.0
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 41.5
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 41.4
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 40.1
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 39.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 39.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 39.2
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 39.1
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 38.9
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 38.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 37.4
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 37.1
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 37.0
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 35.4
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 33.3
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 32.9
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 32.4
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 32.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 31.4
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 30.6
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 30.1
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 29.5
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 29.5
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 29.0
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 28.5
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 28.4
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 24.9
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 24.3
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 23.4
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 22.7
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 20.8
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 19.2
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 17.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 17.5
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 15.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 14.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 14.0
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 14.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 9.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 7.4
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 6.3
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 156.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 156.9
FF:10176-103C5 60 years, female 156.9

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 34.2
Pig sample Sample description nTPM
Putamen
nTPM: 34.2
Samples: 4

Max nTPM: 40.0
Min nTPM: 29.9
Sample A Female 40.0
Sample B Female 29.9
Sample C Male 36.4
Sample D Male 30.6

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