BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:75.5 nTPM
HPA:75.5 nTPM
GTEx:50.4 nTPM
FANTOM5:120.6 Scaled Tags Per Million
Pig:72.4 nTPM
Mouse:53.0 nTPM
Allen mouse:4.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 75.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 50.9
2846 Female, age 79, unknown 80.5
2290 Female, age 72, unknown 70.8
1857 Female, age 85, left hemisphere 50.7
2289 Male, age 61, right hemisphere 48.9
2481 Female, age 94, left hemisphere 43.5
1781 Male, age 74, unknown 38.6
2288 Male, age 75, left hemisphere 38.1
1854 Male, age 80, left hemisphere 36.3
Claustrum
nTPM: 29.7
2196 Female, age 79, unknown 40.5
2568 Male, age 61, both hemispheres 37.9
2198 Male, age 80, both hemispheres 35.1
2284 Female, age 91, both hemispheres 33.3
2645 Female, age 72, unknown 29.4
2491 Male, age 75, both hemispheres 25.3
2392 Female, age 94, both hemispheres 24.9
1956 Male, age 74, unknown 21.6
2292 Female, age 85, both hemispheres 19.2
Globus pallidus, externus
nTPM: 28.8
2567 Female, age 72, unknown 35.7
1996 Male, age 80, right hemisphere 33.0
2646 Male, age 61, right hemisphere 31.3
2395 Male, age 75, both hemispheres 22.0
2772 Female, age 79, unknown 21.9
Globus pallidus, internus
nTPM: 28.4
2483 Female, age 94, right hemisphere 41.5
2566 Female, age 72, unknown 30.6
1818 Male, age 74, unknown 29.7
2287 Male, age 75, right hemisphere 29.0
2111 Female, age 85, right hemisphere 25.7
2037 Male, age 80, right hemisphere 24.8
2778 Female, age 91, both hemispheres 17.7
Nucleus accumbens
nTPM: 44.5
1856 Female, age 91, right hemisphere 71.7
1783 Male, age 74, unknown 62.5
2698 Female, age 72, unknown 55.9
1806 Female, age 85, left hemisphere 49.4
2824 Male, age 61, right hemisphere 37.3
2286 Male, age 75, left hemisphere 28.1
2732 Male, age 80, right hemisphere 27.3
2391 Female, age 94, left hemisphere 23.8
Nucleus basalis of Meynert
nTPM: 53.5
2484 Female, age 94, left hemisphere 69.7
2393 Male, age 80, right hemisphere 62.6
2569 Male, age 61, both hemispheres 42.4
2821 Male, age 75, both hemispheres 39.5
Nucleus of the diagonal band
nTPM: 15.0
1979 Male, age 74, unknown 27.1
2195 Female, age 85, both hemispheres 14.8
1812 Female, age 91, both hemispheres 11.7
2775 Male, age 80, right hemisphere 11.6
2029 Male, age 61, right hemisphere 9.7
Olfactory tubercle
nTPM: 13.1
2487 Female, age 94, left hemisphere 15.5
1998 Female, age 91, both hemispheres 13.1
2856 Male, age 75, right hemisphere 12.8
1846 Male, age 80, right hemisphere 11.0
Putamen
nTPM: 75.5
2489 Female, age 72, unknown 113.6
2466 Female, age 79, unknown 89.9
1829 Male, age 74, unknown 85.0
1838 Male, age 80, right hemisphere 70.8
2647 Male, age 75, left hemisphere 66.0
2482 Female, age 94, left hemisphere 55.2
1937 Female, age 91, right hemisphere 48.3
Septal nuclei
nTPM: 17.8
2199 Male, age 80, right hemisphere 26.4
2394 Male, age 61, left hemisphere 22.7
2059 Female, age 85, both hemispheres 21.6
2031 Female, age 72, unknown 14.4
1960 Male, age 74, unknown 14.2
2629 Female, age 94, right hemisphere 14.1
2009 Female, age 91, both hemispheres 11.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 50.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 38.6
Samples: 246

Max nTPM: 84.8
Min nTPM: 10.4
Std nTPM: 15.4
Median nTPM: 36.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 84.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 81.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 80.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 78.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 75.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 75.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 71.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 71.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 71.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 71.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 70.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 39.4
Samples: 246

Max nTPM: 142.4
Min nTPM: 9.1
Std nTPM: 18.4
Median nTPM: 36.6
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 142.4
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 135.7
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 93.7
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 92.4
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 89.2
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 83.0
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 78.7
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 76.7
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 74.3
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 74.1
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 73.6
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Brain - Putamen (basal ganglia)
Average nTPM: 50.4
Samples: 205

Max nTPM: 119.8
Min nTPM: 13.9
Std nTPM: 19.7
Median nTPM: 47.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 119.8
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 107.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 107.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 103.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 100.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 98.2
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 93.9
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 92.9
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 92.1
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 87.8
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 85.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 120.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 59.6
FF:10164-103B2 76 years, female 59.6
Globus pallidus
Scaled Tags Per Million: 34.5
FF:10161-103A8 76 years, female 35.2
FF:10175-103C4 60 years, female 33.9
Nucleus accumbens
Scaled Tags Per Million: 58.3
FF:10037-101F1 23-56 years, mixed 58.3
Putamen
Scaled Tags Per Million: 120.6
FF:10176-103C5 60 years, female 120.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 72.4
Pig sample Sample description nTPM
Caudate
nTPM: 66.8
Samples: 4

Max nTPM: 88.6
Min nTPM: 47.7
Sample A Female 47.7
Sample B Female 59.2
Sample C Male 88.6
Sample D Male 71.5
Putamen
nTPM: 72.4
Samples: 4

Max nTPM: 113.8
Min nTPM: 29.0
Sample A Female 29.0
Sample B Female 67.1
Sample C Male 113.8
Sample D Male 79.6
Septum
nTPM: 22.9
Samples: 4

Max nTPM: 33.8
Min nTPM: 14.4
Sample A Female 33.8
Sample B Female 26.1
Sample C Male 17.3
Sample D Male 14.4
Ventral pallidum
nTPM: 33.4
Samples: 4

Max nTPM: 41.2
Min nTPM: 23.8
Sample A Female 41.2
Sample B Female 33.2
Sample C Male 23.8
Sample D Male 35.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 53.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 53.0
Samples: 4

Max nTPM: 60.1
Min nTPM: 48.5
Sample A Male 53.7
Sample B Male 60.1
Sample C Female 49.5
Sample D Female 48.5
Septum
nTPM: 13.0
Samples: 4

Max nTPM: 14.7
Min nTPM: 10.9
Sample A Male 14.5
Sample B Male 10.9
Sample C Female 11.8
Sample D Female 14.7
Ventral forebrain
nTPM: 29.1
Samples: 4

Max nTPM: 36.2
Min nTPM: 23.4
Sample A Male 28.1
Sample B Male 23.4
Sample C Female 36.2
Sample D Female 28.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.5
74635331 Antisense, RP_060215_03_F10, Mouse strain C57BL/6J (56 days, male) 4.5
Pallidum
Expression energy: 1.4
74635331 Antisense, RP_060215_03_F10, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

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