BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:16.4 nTPM
HPA:16.4 nTPM
GTEx:15.1 nTPM
FANTOM5:65.5 Scaled Tags Per Million
Pig:6.1 nTPM
Mouse:10.7 nTPM
Allen mouse:1.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA035059Antibody HPA035060
Glial cells Not detectedMedium
Neuronal cells HighHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 16.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.5
2846 Female, age 79, unknown 16.7
2481 Female, age 94, left hemisphere 16.2
2290 Female, age 72, unknown 15.6
2288 Male, age 75, left hemisphere 15.4
1781 Male, age 74, unknown 15.1
1857 Female, age 85, left hemisphere 15.1
2289 Male, age 61, right hemisphere 15.0
1854 Male, age 80, left hemisphere 14.8
Claustrum
nTPM: 15.7
1956 Male, age 74, unknown 16.8
2196 Female, age 79, unknown 16.6
2292 Female, age 85, both hemispheres 16.4
2198 Male, age 80, both hemispheres 15.9
2284 Female, age 91, both hemispheres 15.4
2568 Male, age 61, both hemispheres 15.4
2392 Female, age 94, both hemispheres 15.3
2491 Male, age 75, both hemispheres 15.2
2645 Female, age 72, unknown 14.6
Globus pallidus, externus
nTPM: 15.4
2395 Male, age 75, both hemispheres 15.8
2567 Female, age 72, unknown 15.6
1996 Male, age 80, right hemisphere 15.5
2772 Female, age 79, unknown 15.5
2646 Male, age 61, right hemisphere 14.7
Globus pallidus, internus
nTPM: 16.4
2287 Male, age 75, right hemisphere 17.6
2111 Female, age 85, right hemisphere 16.7
2778 Female, age 91, both hemispheres 16.7
1818 Male, age 74, unknown 16.4
2566 Female, age 72, unknown 16.2
2483 Female, age 94, right hemisphere 15.6
2037 Male, age 80, right hemisphere 15.3
Nucleus accumbens
nTPM: 15.6
2391 Female, age 94, left hemisphere 17.6
2698 Female, age 72, unknown 16.9
1856 Female, age 91, right hemisphere 16.0
2286 Male, age 75, left hemisphere 15.7
1806 Female, age 85, left hemisphere 15.3
2824 Male, age 61, right hemisphere 14.9
1783 Male, age 74, unknown 14.5
2732 Male, age 80, right hemisphere 14.2
Nucleus basalis of Meynert
nTPM: 15.3
2821 Male, age 75, both hemispheres 16.8
2393 Male, age 80, right hemisphere 15.4
2484 Female, age 94, left hemisphere 14.8
2569 Male, age 61, both hemispheres 14.0
Nucleus of the diagonal band
nTPM: 15.1
2775 Male, age 80, right hemisphere 15.4
1812 Female, age 91, both hemispheres 15.2
1979 Male, age 74, unknown 15.2
2195 Female, age 85, both hemispheres 15.0
2029 Male, age 61, right hemisphere 14.6
Olfactory tubercle
nTPM: 15.2
1846 Male, age 80, right hemisphere 15.6
2856 Male, age 75, right hemisphere 15.4
1998 Female, age 91, both hemispheres 14.9
2487 Female, age 94, left hemisphere 14.9
Putamen
nTPM: 15.5
2482 Female, age 94, left hemisphere 16.4
1829 Male, age 74, unknown 16.2
2647 Male, age 75, left hemisphere 15.8
1937 Female, age 91, right hemisphere 15.4
2489 Female, age 72, unknown 15.2
1838 Male, age 80, right hemisphere 15.0
2466 Female, age 79, unknown 14.6
Septal nuclei
nTPM: 14.8
2629 Female, age 94, right hemisphere 16.3
2031 Female, age 72, unknown 15.2
2199 Male, age 80, right hemisphere 15.1
1960 Male, age 74, unknown 14.9
2009 Female, age 91, both hemispheres 14.7
2394 Male, age 61, left hemisphere 14.2
2059 Female, age 85, both hemispheres 13.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 15.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 14.5
Samples: 246

Max nTPM: 32.2
Min nTPM: 9.3
Std nTPM: 2.7
Median nTPM: 14.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 32.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 27.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 22.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 21.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 20.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 20.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 19.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 19.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 19.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 18.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 18.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 14.2
Samples: 246

Max nTPM: 28.1
Min nTPM: 8.9
Std nTPM: 2.5
Median nTPM: 13.9
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 28.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 23.4
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 23.0
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 20.2
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 19.9
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 19.8
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 19.7
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 19.4
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 19.4
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 19.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 19.3
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Brain - Putamen (basal ganglia)
Average nTPM: 15.1
Samples: 205

Max nTPM: 32.7
Min nTPM: 10.3
Std nTPM: 2.6
Median nTPM: 14.7
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 32.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 25.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 22.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 22.0
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 22.0
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 21.9
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 21.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 20.6
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 20.5
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 20.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 20.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 46.5
FF:10164-103B2 76 years, female 46.5
Globus pallidus
Scaled Tags Per Million: 65.5
FF:10161-103A8 76 years, female 68.6
FF:10175-103C4 60 years, female 62.3
Nucleus accumbens
Scaled Tags Per Million: 31.7
FF:10037-101F1 23-56 years, mixed 31.7
Putamen
Scaled Tags Per Million: 55.2
FF:10176-103C5 60 years, female 55.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 6.1
Pig sample Sample description nTPM
Caudate
nTPM: 5.3
Samples: 4

Max nTPM: 5.8
Min nTPM: 4.7
Sample A Female 5.8
Sample B Female 4.7
Sample C Male 5.6
Sample D Male 4.9
Putamen
nTPM: 6.1
Samples: 4

Max nTPM: 7.1
Min nTPM: 5.7
Sample A Female 5.8
Sample B Female 5.7
Sample C Male 7.1
Sample D Male 5.8
Septum
nTPM: 6.1
Samples: 4

Max nTPM: 6.9
Min nTPM: 5.2
Sample A Female 6.5
Sample B Female 5.7
Sample C Male 6.9
Sample D Male 5.2
Ventral pallidum
nTPM: 5.9
Samples: 4

Max nTPM: 6.2
Min nTPM: 5.5
Sample A Female 6.2
Sample B Female 6.1
Sample C Male 5.7
Sample D Male 5.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 10.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 9.3
Samples: 4

Max nTPM: 10.1
Min nTPM: 8.3
Sample A Male 10.0
Sample B Male 8.3
Sample C Female 10.1
Sample D Female 8.8
Septum
nTPM: 10.7
Samples: 4

Max nTPM: 10.8
Min nTPM: 10.5
Sample A Male 10.5
Sample B Male 10.6
Sample C Female 10.8
Sample D Female 10.8
Ventral forebrain
nTPM: 10.5
Samples: 4

Max nTPM: 11.4
Min nTPM: 9.1
Sample A Male 11.4
Sample B Male 10.9
Sample C Female 9.1
Sample D Female 10.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.5
69262337 Antisense, RP_050303_02_B07, Mouse strain C57BL/6J (56 days, male) 1.5
Pallidum
Expression energy: 1.8
69262337 Antisense, RP_050303_02_B07, Mouse strain C57BL/6J (56 days, male) 1.8

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