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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:75.4 nTPM
HPA:75.4 nTPM
GTEx:93.9 nTPM
FANTOM5:19.9 Scaled Tags Per Million
Pig:51.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 75.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 72.2
1981 Female, age 72, midline 76.4
2816 Male, age 47, midline 73.8
2565 Male, age 75, midline 73.7
2048 Male, age 55, midline 69.0
2194 Female, age 79, both hemispheres 68.3
Cervical spinal cord, dorsal horn
nTPM: 75.4
2296 Male, age 66, both hemispheres 82.6
2173 Female, age 72, unknown 79.1
2069 Male, age 47, both hemispheres 74.5
2297 Male, age 75, both hemispheres 73.2
1877 Male, age 55, unknown 72.0
2721 Male, age 90, both hemispheres 71.0
Cervical spinal cord, ventral horn
nTPM: 71.9
2098 Female, age 72, unknown 78.7
2480 Male, age 75, both hemispheres 73.2
2809 Male, age 90, both hemispheres 71.7
2068 Male, age 55, unknown 70.8
2295 Male, age 66, both hemispheres 69.3
2820 Female, age 79, both hemispheres 67.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 93.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 93.9
Samples: 159

Max nTPM: 161.1
Min nTPM: 46.9
Std nTPM: 21.3
Median nTPM: 90.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 161.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 152.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 142.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 141.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 140.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 138.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 135.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 135.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 134.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 132.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 131.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 130.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 129.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 128.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 127.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 126.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 124.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 124.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 122.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 122.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 117.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 117.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 117.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 116.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 116.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 115.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 114.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 113.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 113.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 112.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 112.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 111.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 110.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 110.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 109.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 109.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 108.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 108.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 108.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 107.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 106.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 106.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 106.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 105.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 104.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 104.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 103.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 103.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 102.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 101.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 101.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 101.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 100.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 100.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 100.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 99.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 99.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 98.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 98.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 97.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 97.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 96.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 95.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 95.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 95.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 95.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 95.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 94.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 94.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 93.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 92.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 92.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 92.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 92.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 91.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 91.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 91.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 90.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 90.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 90.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 90.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 89.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 89.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 89.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 88.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 88.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 88.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 87.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 87.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 86.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 86.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 86.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 86.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 86.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 86.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 86.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 85.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 85.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 84.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 84.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 84.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 84.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 84.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 83.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 83.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 82.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 82.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 81.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 81.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 80.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 80.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 80.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 80.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 80.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 80.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 79.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 79.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 79.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 79.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 79.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 79.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 79.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 78.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 78.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 77.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 77.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 76.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 76.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 76.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 75.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 75.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 74.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 73.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 72.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 72.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 72.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 71.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 70.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 69.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 69.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 69.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 68.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 68.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 67.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 67.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 66.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 66.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 65.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 65.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 65.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 64.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 63.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 63.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 62.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 61.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 60.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 59.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 56.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 46.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 19.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 19.9
FF:10181-103D1 60 years, female 22.0
FF:10159-103A6 76 years, female 17.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 51.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 49.5
Samples: 4

Max nTPM: 54.5
Min nTPM: 46.1
Sample A Female 46.1
Sample B Female 48.1
Sample C Male 54.5
Sample D Male 49.3
Ventral spinal cord
nTPM: 51.2
Samples: 4

Max nTPM: 53.7
Min nTPM: 45.6
Sample A Female 45.6
Sample B Female 52.2
Sample C Male 53.2
Sample D Male 53.7

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