MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:70.5 nTPM
HPA:70.5 nTPM
GTEx:76.1 nTPM
FANTOM5:36.2 Scaled Tags Per Million
Pig:49.8 nTPM
Mouse:31.0 nTPM
Allen mouse:7.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 70.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.4
1870 Female, age 42, unknown 70.9
2411 Female, age 72, unknown 70.9
2019 Male, age 18, unknown 70.1
1833 Male, age 53, unknown 69.9
1827 Male, age 72, unknown 68.6
2219 Male, age 76, both hemispheres 68.1
2828 Female, age 72, unknown 68.0
1830 Male, age 51, unknown 67.7
2586 Male, age 75, left hemisphere 65.0
2666 Male, age 74, left hemisphere 64.9
Dorsal raphe nucleus
nTPM: 69.5
2298 Female, age 72, unknown 72.1
2750 Male, age 76, both hemispheres 71.5
1828 Male, age 53, unknown 68.4
2047 Male, age 72, unknown 68.3
2016 Female, age 72, unknown 67.0
Inferior colliculus
nTPM: 66.8
1890 Male, age 53, unknown 67.3
2849 Male, age 72, unknown 67.3
1848 Female, age 42, unknown 67.0
2097 Female, age 72, unknown 65.5
Median raphe nucleus
nTPM: 69.0
2220 Male, age 76, midline 69.0
Pedunculopontine tegmental nucleus
nTPM: 70.5
2338 Male, age 61, both hemispheres 72.7
2334 Male, age 80, both hemispheres 71.5
1921 Female, age 85, both hemispheres 67.4
Periaquaductal grey, anterior
nTPM: 68.6
2502 Female, age 75, unknown 69.2
1947 Male, age 18, unknown 68.7
1795 Male, age 51, unknown 68.0
Periaquaductal grey, dorsal
nTPM: 66.4
2850 Male, age 76, both hemispheres 69.5
1840 Male, age 53, unknown 66.6
1831 Male, age 72, unknown 65.3
2464 Female, age 72, unknown 64.3
Periaquaductal grey, lateral
nTPM: 69.6
2272 Male, age 74, both hemispheres 73.8
2053 Male, age 18, unknown 68.9
2140 Male, age 76, both hemispheres 66.1
Pretectal area
nTPM: 69.0
2273 Male, age 74, both hemispheres 72.5
1817 Female, age 42, unknown 71.7
2224 Female, age 72, unknown 69.9
2007 Male, age 72, unknown 69.0
2407 Male, age 75, both hemispheres 68.5
2667 Female, age 75, unknown 68.5
1816 Male, age 51, unknown 68.4
1815 Male, age 53, unknown 68.1
1944 Female, age 72, unknown 67.9
2316 Male, age 76, right hemisphere 67.4
2825 Male, age 18, unknown 67.4
Red nucleus
nTPM: 69.9
1821 Female, age 72, unknown 72.7
1865 Male, age 51, unknown 72.7
1954 Female, age 42, unknown 71.6
2725 Female, age 75, unknown 71.3
1904 Male, age 53, unknown 71.0
2823 Male, age 76, right hemisphere 70.2
2769 Male, age 72, unknown 70.0
2227 Male, age 72, unknown 69.5
2503 Female, age 72, unknown 69.4
2785 Male, age 18, unknown 69.4
2584 Male, age 75, left hemisphere 66.0
2588 Male, age 74, left hemisphere 65.1
Substantia nigra
nTPM: 67.9
1916 Female, age 42, unknown 71.2
1851 Male, age 51, unknown 70.0
2699 Male, age 18, unknown 69.6
1889 Female, age 72, unknown 68.7
1941 Male, age 53, unknown 68.7
2241 Male, age 72, unknown 68.6
2583 Male, age 75, right hemisphere 66.9
2590 Female, age 75, unknown 66.1
2665 Male, age 74, both hemispheres 65.0
2409 Female, age 72, unknown 64.3
Superior colliculus
nTPM: 68.3
2587 Male, age 74, left hemisphere 71.4
1895 Male, age 76, right hemisphere 69.4
1913 Female, age 42, unknown 69.3
1995 Male, age 72, unknown 68.8
2668 Female, age 75, unknown 68.5
1839 Male, age 51, unknown 67.8
1796 Male, age 53, unknown 67.7
2261 Male, age 18, unknown 67.0
2087 Female, age 72, unknown 66.4
2664 Male, age 75, both hemispheres 66.4
Ventral tegmental area
nTPM: 68.6
1915 Female, age 42, unknown 70.4
2218 Male, age 76, both hemispheres 70.1
2223 Female, age 72, unknown 70.0
2410 Female, age 72, unknown 68.4
2021 Male, age 53, unknown 66.4
1942 Male, age 51, unknown 66.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 76.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 76.1
Samples: 139

Max nTPM: 137.7
Min nTPM: 47.0
Std nTPM: 14.7
Median nTPM: 74.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 137.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 124.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 124.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 123.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 109.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 108.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 105.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 103.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 101.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 99.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 99.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.2
FF:10158-103A5 76 years, female 36.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 49.8
Pig sample Sample description nTPM
Midbrain
nTPM: 49.8
Samples: 4

Max nTPM: 74.5
Min nTPM: 35.9
Sample A Female 74.5
Sample B Female 48.0
Sample C Male 35.9
Sample D Male 40.7
Periaqueductal gray
nTPM: 37.2
Samples: 3

Max nTPM: 37.9
Min nTPM: 36.4
Sample B Female 36.4
Sample C Male 37.9
Sample D Male 37.4
Substantia nigra
nTPM: 42.5
Samples: 4

Max nTPM: 50.3
Min nTPM: 33.6
Sample A Female 50.3
Sample B Female 33.6
Sample C Male 38.4
Sample D Male 47.6
Superior colliculi
nTPM: 44.8
Samples: 4

Max nTPM: 55.2
Min nTPM: 34.1
Sample A Female 55.2
Sample B Female 34.1
Sample C Male 45.5
Sample D Male 44.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.0
Samples: 4

Max nTPM: 37.3
Min nTPM: 26.8
Sample A Male 37.3
Sample B Male 28.6
Sample C Female 26.8
Sample D Female 31.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.1
69079981 Antisense, RP_050324_01_A08, Mouse strain C57BL/6J (56 days, male) 7.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.