MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:107.1 nTPM
HPA:107.1 nTPM
GTEx:120.3 nTPM
FANTOM5:92.8 Scaled Tags Per Million
Pig:27.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 107.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 102.1
1833 Male, age 53, unknown 106.0
1830 Male, age 51, unknown 105.4
1870 Female, age 42, unknown 103.6
2828 Female, age 72, unknown 102.4
2666 Male, age 74, left hemisphere 102.2
2219 Male, age 76, both hemispheres 101.8
2019 Male, age 18, unknown 100.8
2411 Female, age 72, unknown 100.7
1827 Male, age 72, unknown 99.4
2586 Male, age 75, left hemisphere 98.2
Dorsal raphe nucleus
nTPM: 102.9
2750 Male, age 76, both hemispheres 107.3
2016 Female, age 72, unknown 103.6
2047 Male, age 72, unknown 102.9
1828 Male, age 53, unknown 101.7
2298 Female, age 72, unknown 98.8
Inferior colliculus
nTPM: 99.2
2849 Male, age 72, unknown 100.8
1890 Male, age 53, unknown 100.1
1848 Female, age 42, unknown 98.2
2097 Female, age 72, unknown 97.7
Median raphe nucleus
nTPM: 102.8
2220 Male, age 76, midline 102.8
Pedunculopontine tegmental nucleus
nTPM: 102.5
2338 Male, age 61, both hemispheres 108.9
2334 Male, age 80, both hemispheres 101.6
1921 Female, age 85, both hemispheres 97.1
Periaquaductal grey, anterior
nTPM: 99.7
1947 Male, age 18, unknown 101.8
1795 Male, age 51, unknown 99.3
2502 Female, age 75, unknown 98.0
Periaquaductal grey, dorsal
nTPM: 100.9
2850 Male, age 76, both hemispheres 104.0
2464 Female, age 72, unknown 101.5
1831 Male, age 72, unknown 100.4
1840 Male, age 53, unknown 97.7
Periaquaductal grey, lateral
nTPM: 103.9
2272 Male, age 74, both hemispheres 106.5
2140 Male, age 76, both hemispheres 104.4
2053 Male, age 18, unknown 100.7
Pretectal area
nTPM: 100.6
2316 Male, age 76, right hemisphere 105.4
2273 Male, age 74, both hemispheres 105.2
2825 Male, age 18, unknown 103.5
2667 Female, age 75, unknown 101.2
2224 Female, age 72, unknown 100.6
2407 Male, age 75, both hemispheres 100.5
1815 Male, age 53, unknown 100.3
1944 Female, age 72, unknown 98.8
2007 Male, age 72, unknown 98.0
1817 Female, age 42, unknown 97.6
1816 Male, age 51, unknown 95.8
Red nucleus
nTPM: 107.1
2823 Male, age 76, right hemisphere 112.6
1904 Male, age 53, unknown 111.9
2725 Female, age 75, unknown 108.5
1865 Male, age 51, unknown 108.4
2227 Male, age 72, unknown 108.0
1954 Female, age 42, unknown 107.5
2769 Male, age 72, unknown 107.1
2588 Male, age 74, left hemisphere 106.2
2503 Female, age 72, unknown 105.0
2785 Male, age 18, unknown 104.3
1821 Female, age 72, unknown 103.4
2584 Male, age 75, left hemisphere 102.1
Substantia nigra
nTPM: 102.9
2409 Female, age 72, unknown 107.2
2699 Male, age 18, unknown 106.9
2583 Male, age 75, right hemisphere 104.8
2665 Male, age 74, both hemispheres 103.6
1851 Male, age 51, unknown 103.1
2590 Female, age 75, unknown 102.6
1916 Female, age 42, unknown 101.3
2241 Male, age 72, unknown 100.3
1941 Male, age 53, unknown 99.8
1889 Female, age 72, unknown 99.5
Superior colliculus
nTPM: 100.7
1995 Male, age 72, unknown 106.4
1913 Female, age 42, unknown 105.2
2587 Male, age 74, left hemisphere 101.3
1895 Male, age 76, right hemisphere 100.8
2668 Female, age 75, unknown 100.7
1839 Male, age 51, unknown 100.0
2087 Female, age 72, unknown 100.0
2261 Male, age 18, unknown 98.5
1796 Male, age 53, unknown 98.1
2664 Male, age 75, both hemispheres 96.4
Ventral tegmental area
nTPM: 102.2
2223 Female, age 72, unknown 104.5
2021 Male, age 53, unknown 103.7
1942 Male, age 51, unknown 103.6
2218 Male, age 76, both hemispheres 102.0
1915 Female, age 42, unknown 101.2
2410 Female, age 72, unknown 98.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 120.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 120.3
Samples: 139

Max nTPM: 209.5
Min nTPM: 45.8
Std nTPM: 29.3
Median nTPM: 117.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 209.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 187.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 184.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 183.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 181.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 174.2
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 173.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 172.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 171.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 166.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 165.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 92.8
FF:10158-103A5 76 years, female 92.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.3
Pig sample Sample description nTPM
Midbrain
nTPM: 22.8
Samples: 4

Max nTPM: 32.8
Min nTPM: 12.6
Sample A Female 32.8
Sample B Female 21.3
Sample C Male 24.5
Sample D Male 12.6
Periaqueductal gray
nTPM: 17.0
Samples: 3

Max nTPM: 18.8
Min nTPM: 15.9
Sample B Female 16.4
Sample C Male 18.8
Sample D Male 15.9
Substantia nigra
nTPM: 24.3
Samples: 4

Max nTPM: 28.7
Min nTPM: 20.0
Sample A Female 25.0
Sample B Female 23.5
Sample C Male 28.7
Sample D Male 20.0
Superior colliculi
nTPM: 27.3
Samples: 4

Max nTPM: 43.4
Min nTPM: 16.6
Sample A Female 19.5
Sample B Female 43.4
Sample C Male 29.8
Sample D Male 16.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.