MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:153.9 nTPM
HPA:153.9 nTPM
GTEx:97.0 nTPM
FANTOM5:71.0 Scaled Tags Per Million
Pig:112.4 nTPM
Mouse:92.5 nTPM
Allen mouse:7.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 153.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 142.4
2586 Male, age 75, left hemisphere 175.5
1827 Male, age 72, unknown 151.1
2019 Male, age 18, unknown 143.6
2666 Male, age 74, left hemisphere 143.0
2828 Female, age 72, unknown 142.7
2219 Male, age 76, both hemispheres 141.9
2411 Female, age 72, unknown 137.6
1870 Female, age 42, unknown 132.2
1833 Male, age 53, unknown 129.4
1830 Male, age 51, unknown 127.5
Dorsal raphe nucleus
nTPM: 131.8
2298 Female, age 72, unknown 141.5
1828 Male, age 53, unknown 131.6
2047 Male, age 72, unknown 131.6
2750 Male, age 76, both hemispheres 129.2
2016 Female, age 72, unknown 124.8
Inferior colliculus
nTPM: 135.3
2097 Female, age 72, unknown 141.7
1848 Female, age 42, unknown 135.3
1890 Male, age 53, unknown 133.9
2849 Male, age 72, unknown 130.3
Median raphe nucleus
nTPM: 135.7
2220 Male, age 76, midline 135.7
Pedunculopontine tegmental nucleus
nTPM: 132.4
1921 Female, age 85, both hemispheres 138.0
2334 Male, age 80, both hemispheres 134.5
2338 Male, age 61, both hemispheres 124.7
Periaquaductal grey, anterior
nTPM: 153.9
1795 Male, age 51, unknown 158.7
2502 Female, age 75, unknown 152.7
1947 Male, age 18, unknown 150.3
Periaquaductal grey, dorsal
nTPM: 129.2
1840 Male, age 53, unknown 134.5
2464 Female, age 72, unknown 132.2
1831 Male, age 72, unknown 130.1
2850 Male, age 76, both hemispheres 120.0
Periaquaductal grey, lateral
nTPM: 128.5
2053 Male, age 18, unknown 136.3
2272 Male, age 74, both hemispheres 126.6
2140 Male, age 76, both hemispheres 122.7
Pretectal area
nTPM: 148.2
1816 Male, age 51, unknown 179.7
2007 Male, age 72, unknown 161.4
1944 Female, age 72, unknown 160.5
1817 Female, age 42, unknown 158.0
1815 Male, age 53, unknown 152.4
2667 Female, age 75, unknown 150.2
2407 Male, age 75, both hemispheres 145.2
2825 Male, age 18, unknown 134.8
2224 Female, age 72, unknown 131.8
2273 Male, age 74, both hemispheres 130.7
2316 Male, age 76, right hemisphere 125.0
Red nucleus
nTPM: 135.5
2785 Male, age 18, unknown 143.0
2588 Male, age 74, left hemisphere 142.6
2584 Male, age 75, left hemisphere 142.5
1821 Female, age 72, unknown 140.8
2503 Female, age 72, unknown 135.3
2227 Male, age 72, unknown 134.6
2769 Male, age 72, unknown 133.8
1954 Female, age 42, unknown 132.8
1904 Male, age 53, unknown 132.3
2725 Female, age 75, unknown 132.1
1865 Male, age 51, unknown 131.7
2823 Male, age 76, right hemisphere 124.3
Substantia nigra
nTPM: 146.5
1941 Male, age 53, unknown 156.1
2665 Male, age 74, both hemispheres 155.0
1916 Female, age 42, unknown 154.9
1889 Female, age 72, unknown 152.2
1851 Male, age 51, unknown 152.0
2583 Male, age 75, right hemisphere 146.5
2241 Male, age 72, unknown 141.0
2590 Female, age 75, unknown 138.7
2409 Female, age 72, unknown 138.1
2699 Male, age 18, unknown 130.2
Superior colliculus
nTPM: 146.3
2664 Male, age 75, both hemispheres 165.1
2261 Male, age 18, unknown 157.6
1796 Male, age 53, unknown 156.6
2087 Female, age 72, unknown 156.4
2668 Female, age 75, unknown 153.9
1895 Male, age 76, right hemisphere 136.9
1913 Female, age 42, unknown 135.2
2587 Male, age 74, left hemisphere 134.6
1995 Male, age 72, unknown 134.3
1839 Male, age 51, unknown 132.6
Ventral tegmental area
nTPM: 139.3
2410 Female, age 72, unknown 149.9
1915 Female, age 42, unknown 144.5
2218 Male, age 76, both hemispheres 141.4
1942 Male, age 51, unknown 138.5
2223 Female, age 72, unknown 134.0
2021 Male, age 53, unknown 127.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 97.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 97.0
Samples: 139

Max nTPM: 272.2
Min nTPM: 51.6
Std nTPM: 29.6
Median nTPM: 93.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 272.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 183.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 168.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 166.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 160.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 154.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 142.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 142.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 140.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 140.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 139.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.0
FF:10158-103A5 76 years, female 71.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 112.4
Pig sample Sample description nTPM
Midbrain
nTPM: 101.5
Samples: 4

Max nTPM: 169.2
Min nTPM: 66.7
Sample A Female 66.7
Sample B Female 69.7
Sample C Male 169.2
Sample D Male 100.4
Periaqueductal gray
nTPM: 67.5
Samples: 3

Max nTPM: 75.2
Min nTPM: 62.7
Sample B Female 64.5
Sample C Male 75.2
Sample D Male 62.7
Substantia nigra
nTPM: 71.3
Samples: 4

Max nTPM: 94.5
Min nTPM: 52.1
Sample A Female 94.5
Sample B Female 57.6
Sample C Male 80.9
Sample D Male 52.1
Superior colliculi
nTPM: 112.4
Samples: 4

Max nTPM: 151.6
Min nTPM: 81.0
Sample A Female 109.8
Sample B Female 81.0
Sample C Male 151.6
Sample D Male 107.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 92.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 92.5
Samples: 4

Max nTPM: 94.8
Min nTPM: 91.1
Sample A Male 94.8
Sample B Male 91.4
Sample C Female 91.1
Sample D Female 92.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.7
68637491 Antisense, RP_050126_01_A06, Mouse strain C57BL/6J (56 days, male) 7.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.