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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:100.3 nTPM
GTEx:100.3 nTPM
FANTOM5:89.5 Scaled Tags Per Million
Pig:31.6 nTPM
Mouse:198.6 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 100.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 100.3
Samples: 105

Max nTPM: 175.6
Min nTPM: 50.9
Std nTPM: 22.4
Median nTPM:
490_1 67 years, female 175.6
491_1 89 years, female 169.6
413_1 59 years, female 157.7
149_1 88 years, male 151.0
32_1 67 years, male 144.4
495_1 57 years, female 144.4
142_1 61 years, female 133.0
501_1 88 years, male 132.8
139_1 64 years, female 131.2
315_1 62 years, female 130.9
415_1 77 years, female 130.4
466_1 57 years, female 129.0
43_1 64 years, female 126.2
162_1 79 years, female 125.2
109_1 81 years, female 125.1
81_1 67 years, male 124.8
126_1 63 years, male 121.3
414_1 84 years, female 121.2
17_1 71 years, male 120.1
313_1 79 years, female 119.9
42_1 85 years, male 118.2
4_1 88 years, female 117.8
153_1 70 years, female 115.9
89_1 63 years, male 115.4
18_1 88 years, male 113.8
117_1 61 years, male 113.3
9_1 66 years, female 112.3
137_1 83 years, male 111.2
119_1 70 years, female 110.8
468_1 89 years, male 110.6
2_1 77 years, female 110.5
35_1 74 years, female 110.2
316_1 62 years, male 109.8
120_1 70 years, female 109.4
518_1 75 years, female 109.4
324_1 76 years, male 107.7
217_1 76 years, male 105.3
322_1 76 years, male 105.0
145_1 84 years, male 103.9
6_1 73 years, female 103.2
266_1 85 years, male 103.1
115_1 83 years, male 102.3
265_1 87 years, male 102.2
288_1 66 years, female 101.1
311_1 78 years, male 100.3
307_1 66 years, female 99.6
499_1 55 years, female 99.0
314_1 67 years, male 98.9
396_1 62 years, male 97.8
319_1 81 years, male 96.6
348_1 84 years, male 96.5
526_1 61 years, male 96.4
375_1 74 years, female 96.3
254_1 77 years, female 94.7
389_1 86 years, female 94.6
251_1 78 years, male 94.2
480_1 63 years, male 94.2
286_1 68 years, female 94.0
246_1 77 years, male 92.7
405_1 91 years, male 92.7
347_1 72 years, male 92.1
321_1 62 years, female 91.7
99_1 64 years, male 91.2
320_1 89 years, female 91.1
237_1 82 years, male 90.4
379_1 60 years, male 90.1
404_1 82 years, female 90.0
447_1 81 years, male 89.7
517_1 88 years, male 89.0
425_1 59 years, female 88.4
503_1 68 years, male 88.3
41_1 94 years, female 88.2
377_1 82 years, female 86.6
308_1 70 years, female 86.2
264_1 73 years, female 86.1
354_1 81 years, female 85.2
335_1 73 years, female 85.0
406_1 79 years, male 84.8
292_1 71 years, male 84.5
386_1 76 years, male 84.3
384_1 83 years, male 83.5
349_1 83 years, male 83.4
243_1 75 years, male 83.3
229_1 69 years, female 83.1
352_1 62 years, male 82.4
506_1 65 years, male 81.9
350_1 84 years, female 81.0
452_1 88 years, female 80.4
355_1 70 years, female 80.3
291_1 76 years, male 79.8
293_1 68 years, female 79.8
394_1 75 years, female 79.8
189_1 76 years, male 79.7
351_1 91 years, male 77.4
353_1 82 years, female 76.9
356_1 87 years, female 75.2
173_1 67 years, male 74.9
295_1 61 years, female 74.9
376_1 75 years, female 74.4
172_1 72 years, female 73.7
317_1 60 years, male 73.3
318_1 68 years, male 70.3
177_1 74 years, male 59.6
163_1 78 years, male 54.9
218_1 71 years, female 50.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 89.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 89.5
FF:10030-101E3 24-65 years, mixed 89.5

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 31.6
Pig sample Sample description nTPM
Retina
nTPM: 31.6
Samples: 4

Max nTPM: 34.7
Min nTPM: 27.4
Sample A Female 27.4
Sample B Female 34.7
Sample C Male 34.0
Sample D Male 30.1

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 198.6
Mouse sample Sample description nTPM
Retina
nTPM: 198.6
Samples: 4

Max nTPM: 225.0
Min nTPM: 169.9
Sample A Male 225.0
Sample B Male 169.9
Sample C Female 183.6
Sample D Female 215.8

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by the Knut & Alice Wallenberg Foundation.