HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:36.9 nTPM
HPA:36.9 nTPM
GTEx:84.6 nTPM
FANTOM5:159.0 Scaled Tags Per Million
Pig:33.9 nTPM
Mouse:21.0 nTPM
Allen mouse:0.5 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 36.9
Sample id Sample description nTPM
Hippocampus
nTPM: 14.4
2529 Female, age 94, left hemisphere 22.6
1911 Female, age 85, right hemisphere 22.4
2621 Female, age 67, right hemisphere 15.3
1898 Male, age 80, left hemisphere 10.4
2148 Female, age 91, left hemisphere 9.5
1855 Male, age 76, left hemisphere 6.1
Dentate gyrus
nTPM: 17.0
2530 Female, age 94, left hemisphere 46.6
2010 Male, age 76, both hemispheres 16.6
2528 Male, age 74, both hemispheres 16.5
2246 Female, age 85, both hemispheres 11.9
2531 Female, age 67, both hemispheres 7.6
1927 Female, age 91, both hemispheres 2.4
Entorhinal gyrus
nTPM: 22.9
2117 Female, age 91, right hemisphere 55.2
2764 Male, age 80, right hemisphere 37.5
2613 Female, age 94, left hemisphere 16.4
2686 Male, age 75, right hemisphere 10.7
1938 Female, age 85, left hemisphere 9.1
1787 Male, age 76, left hemisphere 8.7
Hippocampus, CA1
nTPM: 7.6
2082 Female, age 91, right hemisphere 13.6
2527 Male, age 74, both hemispheres 12.4
1873 Female, age 85, both hemispheres 9.9
2749 Male, age 80, left hemisphere 2.3
2045 Male, age 76, both hemispheres 0.0
Hippocampus, CA2
nTPM: 15.8
1963 Male, age 80, left hemisphere 23.9
2437 Female, age 94, left hemisphere 19.5
2249 Male, age 74, both hemispheres 18.6
2113 Female, age 91, right hemisphere 17.9
1940 Female, age 85, left hemisphere 15.0
1892 Male, age 76, both hemispheres 0.0
Hippocampus, CA3
nTPM: 8.2
1891 Female, age 85, both hemispheres 33.6
1867 Male, age 76, both hemispheres 13.5
2436 Male, age 74, both hemispheres 2.3
2137 Male, age 80, left hemisphere 0.0
2620 Female, age 94, left hemisphere 0.0
2861 Female, age 67, both hemispheres 0.0
Parahippocampal cortex
nTPM: 12.5
2692 Male, age 74, both hemispheres 32.9
2532 Female, age 72, left hemisphere 28.9
1990 Female, age 91, right hemisphere 23.8
1850 Male, age 80, both hemispheres 12.3
2245 Female, age 91, both hemispheres 10.7
2018 Male, age 76, both hemispheres 8.5
1933 Female, age 85, both hemispheres 7.3
2693 Female, age 94, both hemispheres 0.5
2250 Female, age 67, right hemisphere 0.0
2622 Female, age 67, right hemisphere 0.0
Perirhinal gyrus
nTPM: 1.0
2848 Male, age 76, right hemisphere 2.8
1794 Male, age 80, right hemisphere 1.4
2521 Female, age 94, right hemisphere 1.0
1841 Female, age 85, right hemisphere 0.0
1847 Female, age 91, left hemisphere 0.0
Subiculum
nTPM: 36.9
2042 Male, age 76, both hemispheres 65.0
1901 Male, age 80, both hemispheres 51.1
2438 Female, age 94, left hemisphere 38.7
1977 Female, age 85, both hemispheres 27.6
2619 Male, age 74, both hemispheres 24.0
2729 Female, age 91, right hemisphere 14.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 84.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 84.6
Samples: 197

Max nTPM: 363.7
Min nTPM: 6.1
Std nTPM: 61.4
Median nTPM: 67.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 363.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 361.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 308.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 252.5
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 237.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 220.4
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 216.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 209.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 208.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 208.7
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 208.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 159.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 159.0
FF:10153-102I9 76 years, female 207.0
FF:10169-103B7 60 years, female 110.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 33.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 33.9
Samples: 4

Max nTPM: 52.7
Min nTPM: 8.0
Sample A Female 51.1
Sample B Female 23.9
Sample C Male 52.7
Sample D Male 8.0
Entorhinal cortex
nTPM: 13.1
Samples: 4

Max nTPM: 15.0
Min nTPM: 11.0
Sample A Female 11.5
Sample B Female 15.0
Sample C Male 11.0
Sample D Male 14.8
Subiculum
nTPM: 17.0
Samples: 4

Max nTPM: 20.1
Min nTPM: 14.0
Sample A Female 20.1
Sample B Female 19.3
Sample C Male 14.6
Sample D Male 14.0
Ventral hippocampus
nTPM: 24.7
Samples: 4

Max nTPM: 32.0
Min nTPM: 11.8
Sample A Female 27.3
Sample B Female 11.8
Sample C Male 27.7
Sample D Male 32.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 21.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 9.7
Samples: 4

Max nTPM: 14.9
Min nTPM: 5.1
Sample A Male 14.9
Sample B Male 8.8
Sample C Female 9.9
Sample D Female 5.1
Hippocampal formation
nTPM: 21.0
Samples: 4

Max nTPM: 33.1
Min nTPM: 11.0
Sample A Male 11.0
Sample B Male 20.0
Sample C Female 33.1
Sample D Female 19.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.5
70295805 Antisense, RP_050531_03_H09, Mouse strain C57BL/6J (56 days, male) 0.5

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