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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:43.5 nTPM
HPA:43.5 nTPM
GTEx:165.4 nTPM
FANTOM5:299.8 Scaled Tags Per Million
Pig:72.8 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 43.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 33.3
2816 Male, age 47, midline 41.6
2194 Female, age 79, both hemispheres 41.5
1981 Female, age 72, midline 33.7
2048 Male, age 55, midline 27.6
2565 Male, age 75, midline 22.1
Cervical spinal cord, dorsal horn
nTPM: 39.5
2296 Male, age 66, both hemispheres 76.4
2173 Female, age 72, unknown 54.7
1877 Male, age 55, unknown 36.7
2069 Male, age 47, both hemispheres 32.4
2721 Male, age 90, both hemispheres 19.2
2297 Male, age 75, both hemispheres 17.5
Cervical spinal cord, ventral horn
nTPM: 43.5
2820 Female, age 79, both hemispheres 63.9
2068 Male, age 55, unknown 61.1
2480 Male, age 75, both hemispheres 39.2
2809 Male, age 90, both hemispheres 36.2
2098 Female, age 72, unknown 33.2
2295 Male, age 66, both hemispheres 27.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 165.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 165.4
Samples: 159

Max nTPM: 407.8
Min nTPM: 42.2
Std nTPM: 68.1
Median nTPM: 154.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 407.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 394.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 392.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 331.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 314.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 304.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 300.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 298.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 290.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 289.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 271.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 262.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 261.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 257.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 255.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 254.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 253.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 248.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 248.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 246.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 244.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 241.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 228.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 226.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 221.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 220.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 219.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 219.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 217.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 217.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 217.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 216.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 214.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 212.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 210.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 210.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 208.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 205.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 205.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 205.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 204.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 204.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 203.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 200.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 200.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 199.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 196.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 195.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 194.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 194.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 188.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 188.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 188.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 187.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 187.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 184.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 184.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 181.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 179.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 178.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 178.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 176.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 175.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 172.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 171.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 170.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 169.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 168.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 168.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 166.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 164.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 163.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 159.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 159.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 158.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 156.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 155.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 155.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 154.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 154.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 153.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 153.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 152.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 151.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 150.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 149.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 148.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 147.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 146.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 146.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 145.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 145.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 142.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 141.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 141.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 140.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 139.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 139.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 136.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 134.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 133.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 132.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 131.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 131.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 131.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 129.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 127.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 126.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 126.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 125.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 125.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 124.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 124.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 124.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 122.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 122.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 121.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 120.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 119.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 118.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 117.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 117.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 115.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 114.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 112.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 110.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 109.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 108.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 108.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 107.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 107.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 105.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 103.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 103.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 99.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 98.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 98.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 93.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 93.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 93.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 87.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 86.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 85.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 83.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 82.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 81.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 79.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 77.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 76.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 75.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 72.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 70.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 68.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 67.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 63.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 58.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 57.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 45.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 42.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 299.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 299.8
FF:10181-103D1 60 years, female 343.8
FF:10159-103A6 76 years, female 255.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 72.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 62.2
Samples: 4

Max nTPM: 79.1
Min nTPM: 37.7
Sample A Female 79.1
Sample B Female 59.1
Sample C Male 37.7
Sample D Male 72.8
Ventral spinal cord
nTPM: 72.8
Samples: 4

Max nTPM: 92.4
Min nTPM: 57.7
Sample A Female 92.4
Sample B Female 57.7
Sample C Male 65.5
Sample D Male 75.7

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