BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:102.5 nTPM
HPA:102.5 nTPM
GTEx:85.8 nTPM
FANTOM5:207.7 Scaled Tags Per Million
Pig:17.5 nTPM
Mouse:14.4 nTPM
Allen mouse:10.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA041315
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 102.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 102.5
1857 Female, age 85, left hemisphere 109.6
1854 Male, age 80, left hemisphere 107.5
2288 Male, age 75, left hemisphere 105.5
2289 Male, age 61, right hemisphere 104.2
2481 Female, age 94, left hemisphere 104.2
2846 Female, age 79, unknown 101.7
2290 Female, age 72, unknown 97.2
1781 Male, age 74, unknown 89.9
Claustrum
nTPM: 83.4
2568 Male, age 61, both hemispheres 89.7
2392 Female, age 94, both hemispheres 87.4
2196 Female, age 79, unknown 85.5
2491 Male, age 75, both hemispheres 82.5
2198 Male, age 80, both hemispheres 82.3
2645 Female, age 72, unknown 81.5
1956 Male, age 74, unknown 81.2
2292 Female, age 85, both hemispheres 80.8
2284 Female, age 91, both hemispheres 79.3
Globus pallidus, externus
nTPM: 96.2
1996 Male, age 80, right hemisphere 103.1
2646 Male, age 61, right hemisphere 100.8
2567 Female, age 72, unknown 96.2
2772 Female, age 79, unknown 91.9
2395 Male, age 75, both hemispheres 89.2
Globus pallidus, internus
nTPM: 101.1
2778 Female, age 91, both hemispheres 105.9
2287 Male, age 75, right hemisphere 103.6
2111 Female, age 85, right hemisphere 102.4
2037 Male, age 80, right hemisphere 101.1
2566 Female, age 72, unknown 99.0
2483 Female, age 94, right hemisphere 98.4
1818 Male, age 74, unknown 97.3
Nucleus accumbens
nTPM: 99.2
2286 Male, age 75, left hemisphere 107.3
2824 Male, age 61, right hemisphere 105.3
1806 Female, age 85, left hemisphere 102.7
2391 Female, age 94, left hemisphere 99.5
1783 Male, age 74, unknown 96.5
2698 Female, age 72, unknown 96.5
2732 Male, age 80, right hemisphere 94.2
1856 Female, age 91, right hemisphere 91.9
Nucleus basalis of Meynert
nTPM: 94.9
2393 Male, age 80, right hemisphere 105.8
2569 Male, age 61, both hemispheres 96.8
2484 Female, age 94, left hemisphere 89.9
2821 Male, age 75, both hemispheres 87.4
Nucleus of the diagonal band
nTPM: 83.6
1979 Male, age 74, unknown 87.2
1812 Female, age 91, both hemispheres 85.3
2029 Male, age 61, right hemisphere 83.7
2775 Male, age 80, right hemisphere 82.0
2195 Female, age 85, both hemispheres 80.0
Olfactory tubercle
nTPM: 85.4
2856 Male, age 75, right hemisphere 90.5
1846 Male, age 80, right hemisphere 89.0
2487 Female, age 94, left hemisphere 81.1
1998 Female, age 91, both hemispheres 80.8
Putamen
nTPM: 98.4
1838 Male, age 80, right hemisphere 106.1
1829 Male, age 74, unknown 101.8
2466 Female, age 79, unknown 101.6
2489 Female, age 72, unknown 100.6
2482 Female, age 94, left hemisphere 97.9
1937 Female, age 91, right hemisphere 91.5
2647 Male, age 75, left hemisphere 89.1
Septal nuclei
nTPM: 86.0
2199 Male, age 80, right hemisphere 91.3
2059 Female, age 85, both hemispheres 90.2
2394 Male, age 61, left hemisphere 88.8
2629 Female, age 94, right hemisphere 86.7
2009 Female, age 91, both hemispheres 83.4
2031 Female, age 72, unknown 82.0
1960 Male, age 74, unknown 79.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 85.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 85.8
Samples: 246

Max nTPM: 137.8
Min nTPM: 25.0
Std nTPM: 15.7
Median nTPM: 85.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 137.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 126.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 126.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 122.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 119.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 119.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 118.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 117.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 115.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 115.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 113.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 72.5
Samples: 246

Max nTPM: 133.0
Min nTPM: 32.6
Std nTPM: 15.7
Median nTPM: 70.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 133.0
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 129.2
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 114.1
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 113.2
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 111.2
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 109.9
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 109.5
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 108.6
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 107.3
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 106.5
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 105.0
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Brain - Putamen (basal ganglia)
Average nTPM: 85.2
Samples: 205

Max nTPM: 132.4
Min nTPM: 30.0
Std nTPM: 15.9
Median nTPM: 84.9
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 132.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 131.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 128.8
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 120.5
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 118.1
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 116.8
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 115.6
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 112.9
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 111.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 111.8
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 110.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 207.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 122.5
FF:10164-103B2 76 years, female 122.5
Globus pallidus
Scaled Tags Per Million: 207.7
FF:10175-103C4 60 years, female 272.3
FF:10161-103A8 76 years, female 143.1
Nucleus accumbens
Scaled Tags Per Million: 98.4
FF:10037-101F1 23-56 years, mixed 98.4
Putamen
Scaled Tags Per Million: 135.8
FF:10176-103C5 60 years, female 135.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 17.5
Pig sample Sample description nTPM
Caudate
nTPM: 16.9
Samples: 4

Max nTPM: 18.7
Min nTPM: 13.5
Sample A Female 17.6
Sample B Female 17.7
Sample C Male 18.7
Sample D Male 13.5
Putamen
nTPM: 13.7
Samples: 4

Max nTPM: 15.6
Min nTPM: 11.8
Sample A Female 13.7
Sample B Female 11.8
Sample C Male 15.6
Sample D Male 13.5
Septum
nTPM: 17.5
Samples: 4

Max nTPM: 19.8
Min nTPM: 16.6
Sample A Female 19.8
Sample B Female 16.6
Sample C Male 16.8
Sample D Male 16.7
Ventral pallidum
nTPM: 14.5
Samples: 4

Max nTPM: 15.5
Min nTPM: 12.9
Sample A Female 15.5
Sample B Female 15.5
Sample C Male 12.9
Sample D Male 13.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 14.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.5
Samples: 4

Max nTPM: 15.6
Min nTPM: 13.1
Sample A Male 15.6
Sample B Male 14.9
Sample C Female 13.1
Sample D Female 14.2
Septum
nTPM: 10.4
Samples: 4

Max nTPM: 11.5
Min nTPM: 9.5
Sample A Male 10.5
Sample B Male 9.9
Sample C Female 9.5
Sample D Female 11.5
Ventral forebrain
nTPM: 11.5
Samples: 4

Max nTPM: 12.1
Min nTPM: 10.3
Sample A Male 12.1
Sample B Male 11.5
Sample C Female 10.3
Sample D Female 11.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 10.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 10.4
69028378 Antisense, RP_050316_01_B11, Mouse strain C57BL/6J (56 days, male) 10.4
Pallidum
Expression energy: 8.2
69028378 Antisense, RP_050316_01_B11, Mouse strain C57BL/6J (56 days, male) 8.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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