MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:474.4 nTPM
HPA:474.4 nTPM
GTEx:515.5 nTPM
FANTOM5:115.6 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 474.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 427.0
2586 Male, age 75, left hemisphere 464.1
2828 Female, age 72, unknown 447.6
1827 Male, age 72, unknown 437.7
1833 Male, age 53, unknown 431.5
1870 Female, age 42, unknown 429.7
1830 Male, age 51, unknown 424.1
2411 Female, age 72, unknown 413.7
2019 Male, age 18, unknown 410.9
2219 Male, age 76, both hemispheres 405.3
2666 Male, age 74, left hemisphere 405.3
Dorsal raphe nucleus
nTPM: 446.0
1828 Male, age 53, unknown 500.6
2016 Female, age 72, unknown 458.0
2047 Male, age 72, unknown 440.1
2298 Female, age 72, unknown 419.1
2750 Male, age 76, both hemispheres 412.3
Inferior colliculus
nTPM: 460.2
2097 Female, age 72, unknown 473.7
1848 Female, age 42, unknown 466.0
1890 Male, age 53, unknown 451.8
2849 Male, age 72, unknown 449.1
Median raphe nucleus
nTPM: 413.8
2220 Male, age 76, midline 413.8
Pedunculopontine tegmental nucleus
nTPM: 422.5
2334 Male, age 80, both hemispheres 431.3
1921 Female, age 85, both hemispheres 426.7
2338 Male, age 61, both hemispheres 409.6
Periaquaductal grey, anterior
nTPM: 450.5
2502 Female, age 75, unknown 472.2
1795 Male, age 51, unknown 448.7
1947 Male, age 18, unknown 430.5
Periaquaductal grey, dorsal
nTPM: 440.5
1840 Male, age 53, unknown 448.3
2850 Male, age 76, both hemispheres 448.3
2464 Female, age 72, unknown 441.5
1831 Male, age 72, unknown 423.8
Periaquaductal grey, lateral
nTPM: 459.8
2140 Male, age 76, both hemispheres 463.7
2272 Male, age 74, both hemispheres 459.3
2053 Male, age 18, unknown 456.4
Pretectal area
nTPM: 445.8
2273 Male, age 74, both hemispheres 524.0
1944 Female, age 72, unknown 463.7
2825 Male, age 18, unknown 454.9
2316 Male, age 76, right hemisphere 454.4
2667 Female, age 75, unknown 453.5
1816 Male, age 51, unknown 449.9
2224 Female, age 72, unknown 436.3
1817 Female, age 42, unknown 423.1
2007 Male, age 72, unknown 418.0
2407 Male, age 75, both hemispheres 415.4
1815 Male, age 53, unknown 410.7
Red nucleus
nTPM: 445.1
1821 Female, age 72, unknown 474.2
2503 Female, age 72, unknown 472.6
2725 Female, age 75, unknown 461.5
2769 Male, age 72, unknown 459.4
2227 Male, age 72, unknown 456.0
2823 Male, age 76, right hemisphere 449.7
1954 Female, age 42, unknown 446.3
2588 Male, age 74, left hemisphere 442.0
1865 Male, age 51, unknown 422.8
1904 Male, age 53, unknown 422.0
2584 Male, age 75, left hemisphere 419.0
2785 Male, age 18, unknown 416.1
Substantia nigra
nTPM: 474.4
2699 Male, age 18, unknown 530.0
1916 Female, age 42, unknown 514.8
1851 Male, age 51, unknown 501.1
2241 Male, age 72, unknown 496.5
2409 Female, age 72, unknown 480.7
2590 Female, age 75, unknown 469.8
2583 Male, age 75, right hemisphere 444.6
1889 Female, age 72, unknown 443.6
1941 Male, age 53, unknown 432.8
2665 Male, age 74, both hemispheres 430.5
Superior colliculus
nTPM: 448.7
2261 Male, age 18, unknown 486.0
2587 Male, age 74, left hemisphere 482.8
1796 Male, age 53, unknown 463.1
1839 Male, age 51, unknown 463.0
2664 Male, age 75, both hemispheres 452.2
2087 Female, age 72, unknown 446.9
1995 Male, age 72, unknown 433.8
1895 Male, age 76, right hemisphere 431.3
1913 Female, age 42, unknown 418.4
2668 Female, age 75, unknown 409.3
Ventral tegmental area
nTPM: 453.3
2021 Male, age 53, unknown 481.9
1915 Female, age 42, unknown 475.3
2410 Female, age 72, unknown 473.9
2218 Male, age 76, both hemispheres 434.7
2223 Female, age 72, unknown 428.2
1942 Male, age 51, unknown 425.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 515.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 515.5
Samples: 139

Max nTPM: 2625.0
Min nTPM: 31.2
Std nTPM: 431.6
Median nTPM: 383.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 2625.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2316.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 2285.0
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 1740.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1355.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 1354.5
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 1252.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1204.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 1198.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1123.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 1037.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 115.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 115.6
FF:10158-103A5 76 years, female 115.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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