MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:83.0 nTPM
HPA:83.0 nTPM
GTEx:98.9 nTPM
FANTOM5:14.2 Scaled Tags Per Million
Pig:16.6 nTPM
Mouse:22.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 83.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 82.1
2586 Male, age 75, left hemisphere 107.6
2666 Male, age 74, left hemisphere 92.6
2828 Female, age 72, unknown 86.9
1827 Male, age 72, unknown 85.2
2019 Male, age 18, unknown 77.4
2219 Male, age 76, both hemispheres 76.1
2411 Female, age 72, unknown 75.8
1833 Male, age 53, unknown 74.6
1830 Male, age 51, unknown 72.9
1870 Female, age 42, unknown 72.2
Dorsal raphe nucleus
nTPM: 75.9
1828 Male, age 53, unknown 82.7
2047 Male, age 72, unknown 81.7
2750 Male, age 76, both hemispheres 75.2
2298 Female, age 72, unknown 73.0
2016 Female, age 72, unknown 66.7
Inferior colliculus
nTPM: 76.5
1890 Male, age 53, unknown 77.6
2097 Female, age 72, unknown 77.4
2849 Male, age 72, unknown 76.8
1848 Female, age 42, unknown 74.3
Median raphe nucleus
nTPM: 78.9
2220 Male, age 76, midline 78.9
Pedunculopontine tegmental nucleus
nTPM: 75.2
2334 Male, age 80, both hemispheres 79.0
1921 Female, age 85, both hemispheres 73.9
2338 Male, age 61, both hemispheres 72.9
Periaquaductal grey, anterior
nTPM: 82.4
1795 Male, age 51, unknown 83.2
1947 Male, age 18, unknown 83.1
2502 Female, age 75, unknown 80.8
Periaquaductal grey, dorsal
nTPM: 70.2
1840 Male, age 53, unknown 72.6
2464 Female, age 72, unknown 71.5
2850 Male, age 76, both hemispheres 68.5
1831 Male, age 72, unknown 68.1
Periaquaductal grey, lateral
nTPM: 67.6
2140 Male, age 76, both hemispheres 68.4
2053 Male, age 18, unknown 68.3
2272 Male, age 74, both hemispheres 66.1
Pretectal area
nTPM: 77.9
1816 Male, age 51, unknown 93.5
2007 Male, age 72, unknown 89.2
1817 Female, age 42, unknown 87.7
1944 Female, age 72, unknown 87.1
1815 Male, age 53, unknown 82.0
2407 Male, age 75, both hemispheres 77.7
2825 Male, age 18, unknown 73.9
2667 Female, age 75, unknown 72.9
2316 Male, age 76, right hemisphere 66.9
2224 Female, age 72, unknown 64.5
2273 Male, age 74, both hemispheres 61.1
Red nucleus
nTPM: 77.0
2584 Male, age 75, left hemisphere 95.0
2588 Male, age 74, left hemisphere 86.7
2785 Male, age 18, unknown 81.1
2769 Male, age 72, unknown 78.9
2227 Male, age 72, unknown 77.3
2503 Female, age 72, unknown 75.2
1954 Female, age 42, unknown 74.0
1865 Male, age 51, unknown 72.9
2725 Female, age 75, unknown 72.9
1904 Male, age 53, unknown 70.6
1821 Female, age 72, unknown 70.5
2823 Male, age 76, right hemisphere 68.8
Substantia nigra
nTPM: 83.0
2665 Male, age 74, both hemispheres 105.6
1916 Female, age 42, unknown 95.2
1851 Male, age 51, unknown 84.5
2583 Male, age 75, right hemisphere 84.3
1889 Female, age 72, unknown 83.0
1941 Male, age 53, unknown 83.0
2699 Male, age 18, unknown 79.0
2590 Female, age 75, unknown 75.8
2241 Male, age 72, unknown 70.4
2409 Female, age 72, unknown 69.2
Superior colliculus
nTPM: 79.3
2668 Female, age 75, unknown 97.0
2664 Male, age 75, both hemispheres 91.4
2087 Female, age 72, unknown 85.6
2261 Male, age 18, unknown 81.9
1796 Male, age 53, unknown 81.6
1839 Male, age 51, unknown 72.5
1895 Male, age 76, right hemisphere 71.8
2587 Male, age 74, left hemisphere 71.3
1913 Female, age 42, unknown 70.6
1995 Male, age 72, unknown 69.2
Ventral tegmental area
nTPM: 76.8
2410 Female, age 72, unknown 83.5
2218 Male, age 76, both hemispheres 81.4
1915 Female, age 42, unknown 79.4
1942 Male, age 51, unknown 77.2
2021 Male, age 53, unknown 70.0
2223 Female, age 72, unknown 69.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 98.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 98.9
Samples: 139

Max nTPM: 178.8
Min nTPM: 52.2
Std nTPM: 25.7
Median nTPM: 98.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 178.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 157.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 156.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 150.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 146.2
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 146.1
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 143.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 141.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 140.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 138.2
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 136.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.2
FF:10158-103A5 76 years, female 14.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.6
Pig sample Sample description nTPM
Midbrain
nTPM: 14.8
Samples: 4

Max nTPM: 19.1
Min nTPM: 11.2
Sample A Female 11.2
Sample B Female 12.4
Sample C Male 19.1
Sample D Male 16.6
Periaqueductal gray
nTPM: 12.3
Samples: 3

Max nTPM: 13.9
Min nTPM: 10.9
Sample B Female 12.2
Sample C Male 13.9
Sample D Male 10.9
Substantia nigra
nTPM: 14.4
Samples: 4

Max nTPM: 16.0
Min nTPM: 9.9
Sample A Female 16.0
Sample B Female 15.9
Sample C Male 15.9
Sample D Male 9.9
Superior colliculi
nTPM: 16.6
Samples: 4

Max nTPM: 17.3
Min nTPM: 16.1
Sample A Female 16.5
Sample B Female 17.3
Sample C Male 16.4
Sample D Male 16.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.1
Samples: 4

Max nTPM: 23.8
Min nTPM: 20.3
Sample A Male 23.8
Sample B Male 21.5
Sample C Female 20.3
Sample D Female 22.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.