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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:201.1 nTPM
HPA:201.1 nTPM
GTEx:473.0 nTPM
FANTOM5:769.7 Scaled Tags Per Million
Pig:120.7 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 201.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 198.7
2565 Male, age 75, midline 222.6
1981 Female, age 72, midline 213.3
2194 Female, age 79, both hemispheres 200.9
2816 Male, age 47, midline 198.6
2048 Male, age 55, midline 158.0
Cervical spinal cord, dorsal horn
nTPM: 186.1
2296 Male, age 66, both hemispheres 241.3
2173 Female, age 72, unknown 230.0
2069 Male, age 47, both hemispheres 173.2
2297 Male, age 75, both hemispheres 159.3
2721 Male, age 90, both hemispheres 157.9
1877 Male, age 55, unknown 155.3
Cervical spinal cord, ventral horn
nTPM: 201.1
2480 Male, age 75, both hemispheres 225.4
2098 Female, age 72, unknown 217.6
2295 Male, age 66, both hemispheres 200.2
2809 Male, age 90, both hemispheres 199.9
2820 Female, age 79, both hemispheres 182.4
2068 Male, age 55, unknown 181.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 473.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 473.0
Samples: 159

Max nTPM: 1374.9
Min nTPM: 152.9
Std nTPM: 178.9
Median nTPM: 458.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1374.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 850.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 847.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 831.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 818.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 814.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 799.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 793.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 786.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 769.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 750.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 745.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 739.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 727.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 726.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 701.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 691.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 686.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 686.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 682.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 673.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 670.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 664.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 655.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 647.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 637.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 636.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 632.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 627.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 620.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 619.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 615.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 614.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 610.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 608.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 606.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 590.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 590.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 588.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 586.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 584.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 576.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 571.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 570.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 564.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 558.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 557.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 554.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 551.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 543.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 541.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 539.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 539.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 531.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 531.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 524.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 517.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 514.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 513.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 509.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 502.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 501.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 497.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 491.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 491.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 491.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 489.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 481.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 479.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 477.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 477.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 477.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 475.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 470.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 468.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 465.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 460.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 459.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 458.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 458.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 456.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 453.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 451.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 449.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 448.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 439.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 438.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 433.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 432.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 429.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 429.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 426.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 424.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 423.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 420.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 419.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 414.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 405.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 399.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 396.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 393.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 393.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 389.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 388.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 386.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 385.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 382.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 378.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 374.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 372.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 371.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 369.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 367.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 365.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 365.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 361.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 357.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 356.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 353.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 350.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 346.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 346.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 344.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 344.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 342.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 340.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 337.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 335.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 332.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 320.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 315.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 304.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 303.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 302.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 301.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 297.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 279.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 273.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 269.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 254.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 254.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 251.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 246.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 246.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 245.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 241.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 239.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 233.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 229.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 221.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 220.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 218.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 194.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 193.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 179.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 178.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 168.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 156.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 152.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 769.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 769.7
FF:10181-103D1 60 years, female 1054.7
FF:10159-103A6 76 years, female 484.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 120.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 109.4
Samples: 4

Max nTPM: 154.4
Min nTPM: 80.7
Sample A Female 80.7
Sample B Female 110.5
Sample C Male 154.4
Sample D Male 92.1
Ventral spinal cord
nTPM: 120.7
Samples: 4

Max nTPM: 131.9
Min nTPM: 113.9
Sample A Female 113.9
Sample B Female 113.9
Sample C Male 131.9
Sample D Male 123.1

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