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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
C3 is prognostic, high expression is favorable in liver cancer
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average FPKM
1213.6
Number of samples
365
Samples
Sample
Description
FPKM
TCGA-2Y-A9GU-01A
55 years, female, white, stage:i, alive, 1939 days
3130.2
TCGA-CC-A123-01A
24 years, female, asian, stage:iiia, alive, 219 days
2923.3
TCGA-ZP-A9D0-01A
67 years, female, black or african american, alive, 1091 days
2826.3
TCGA-DD-AADY-01A
55 years, female, asian, stage:i, alive, 555 days
2756.4
TCGA-2Y-A9GV-01A
54 years, female, white, stage:i, dead, 2532 days
2703.6
TCGA-DD-AADV-01A
50 years, male, asian, stage:i, alive, 574 days
2667.8
TCGA-LG-A6GG-01A
79 years, female, white, stage:ii, alive, 387 days
2665.5
TCGA-DD-AADI-01A
43 years, female, asian, stage:i, alive, 1085 days
2659.6
TCGA-BC-A5W4-01A
69 years, male, white, stage:iiia, dead, 547 days
2640.3
TCGA-DD-AADP-01A
45 years, male, asian, stage:i, alive, 458 days
2610.1
TCGA-DD-A4NL-01A
46 years, male, white, stage:i, alive, 1711 days
2588.2
TCGA-DD-AACF-01A
68 years, male, asian, stage:i, dead, 365 days
2542.3
TCGA-DD-A4NO-01A
66 years, male, white, stage:i, alive, 2245 days
2539.7
TCGA-DD-A3A5-01A
66 years, female, white, stage:iii, dead, 3125 days
2503.0
TCGA-GJ-A9DB-01A
68 years, male, white, stage:i, dead, 67 days
2487.7
TCGA-ZP-A9D1-01A
56 years, female, white, alive, 21 days
2486.8
TCGA-DD-AAC9-01A
51 years, male, asian, stage:i, alive, 347 days
2428.5
TCGA-2Y-A9GT-01A
51 years, male, white, stage:i, dead, 1624 days
2423.2
TCGA-G3-AAV0-01A
58 years, male, asian, stage:i, alive, 476 days
2411.8
TCGA-2Y-A9H9-01A
70 years, male, white, stage:i, alive, 697 days
2383.0
TCGA-G3-A5SI-01A
44 years, male, asian, stage:ii, dead, 768 days
2365.7
TCGA-ZP-A9CY-01A
66 years, female, white, alive, 782 days
2281.9
TCGA-XR-A8TG-01A
59 years, male, white, stage:i, alive, 898 days
2270.4
TCGA-DD-A11B-01A
73 years, male, white, stage:i, dead, 14 days
2261.9
TCGA-DD-A39Z-01A
43 years, female, stage:ii, dead, 601 days
2217.7
TCGA-KR-A7K2-01A
64 years, male, white, stage:i, alive, 829 days
2210.7
TCGA-DD-AAD3-01A
43 years, male, asian, stage:i, alive, 1295 days
2210.6
TCGA-DD-AACY-01A
61 years, male, asian, stage:i, alive, 1450 days
2209.9
TCGA-3K-AAZ8-01A
65 years, male, black or african american, stage:iiib, alive, 396 days
2182.5
TCGA-G3-A3CJ-01A
52 years, male, american indian or alaska native, stage:ii, alive, 594 days
2167.6
TCGA-DD-AACT-01A
69 years, female, asian, stage:i, alive, 1562 days
2150.8
TCGA-2Y-A9GW-01A
64 years, male, white, stage:i, dead, 1271 days
2148.5
TCGA-DD-AADO-01A
55 years, male, asian, stage:i, alive, 453 days
2140.2
TCGA-DD-A11D-01A
57 years, female, white, stage:i, dead, 1560 days
2117.8
TCGA-ED-A7XP-01A
53 years, female, asian, stage:ii, alive, 400 days
2112.1
TCGA-BD-A3EP-01A
76 years, female, black or african american, stage:i, alive, 409 days
2104.5
TCGA-DD-AAEI-01A
72 years, male, asian, stage:i, alive, 1531 days
2089.3
TCGA-2Y-A9H1-01A
58 years, male, white, stage:i, dead, 1229 days
2084.4
TCGA-2Y-A9GZ-01A
82 years, female, white, stage:ii, dead, 848 days
2078.4
TCGA-DD-AACI-01A
69 years, male, asian, stage:ii, alive, 1618 days
2077.4
TCGA-ZS-A9CE-01A
79 years, female, white, stage:ii, alive, 1241 days
2075.3
TCGA-DD-AAW0-01A
54 years, male, asian, stage:i, alive, 2015 days
2045.6
TCGA-DD-AACV-01A
53 years, male, asian, stage:i, alive, 1531 days
2038.8
TCGA-RC-A7SK-01A
59 years, male, asian, stage:i, alive, 472 days
2016.0
TCGA-DD-A1EK-01A
64 years, female, white, stage:ivb, dead, 558 days
2007.5
TCGA-BC-A10X-01A
52 years, female, white, stage:iiia, dead, 770 days
1962.4
TCGA-DD-AAE4-01A
49 years, female, asian, stage:i, alive, 608 days
1962.2
TCGA-DD-AACS-01A
39 years, male, asian, stage:i, alive, 1804 days
1943.3
TCGA-2Y-A9HB-01A
66 years, male, stage:i, alive, 260 days
1902.5
TCGA-DD-AAVZ-01A
38 years, male, asian, stage:i, alive, 1900 days
1882.2
TCGA-BC-A217-01A
75 years, female, white, stage:ii, dead, 1397 days
1880.3
TCGA-DD-AAVQ-01A
38 years, male, asian, stage:i, alive, 2728 days
1879.5
TCGA-FV-A496-01A
84 years, female, white, stage:i, alive, 10 days
1865.4
TCGA-QA-A7B7-01A
48 years, male, black or african american, stage:ii, alive, 94 days
1863.4
TCGA-ED-A627-01A
74 years, male, white, stage:i, alive, 423 days
1856.7
TCGA-DD-A1ED-01A
68 years, male, white, stage:i, alive, 2301 days
1852.5
TCGA-DD-AAVY-01A
56 years, male, asian, stage:iiia, alive, 1970 days
1849.8
TCGA-DD-A1EA-01A
68 years, male, asian, stage:ii, alive, 2415 days
1845.2
TCGA-ES-A2HT-01A
54 years, male, black or african american, stage:i, dead, 438 days
1828.1
TCGA-MI-A75E-01A
61 years, male, white, stage:iiic, alive, 507 days
1827.5
TCGA-DD-A1EH-01A
23 years, male, white, stage:iii, alive, 1495 days
1821.7
TCGA-DD-AAD2-01A
66 years, male, asian, stage:i, alive, 658 days
1800.5
TCGA-DD-A11C-01A
69 years, male, white, stage:i, alive, 662 days
1799.2
TCGA-DD-A4ND-01A
56 years, female, white, stage:i, alive, 2746 days
1796.3
TCGA-DD-A4NE-01A
75 years, female, white, stage:iiia, dead, 660 days
1792.6
TCGA-HP-A5N0-01A
88 years, female, dead, 1147 days
1763.0
TCGA-ZS-A9CF-01A
64 years, male, white, stage:ii, alive, 2412 days
1759.2
TCGA-BC-A10T-01A
76 years, male, white, dead, 837 days
1745.1
TCGA-DD-AAVW-01A
35 years, male, asian, stage:i, alive, 2317 days
1744.8
TCGA-G3-A6UC-01A
65 years, male, white, stage:iiib, alive, 671 days
1729.9
TCGA-FV-A2QQ-01A
80 years, male, white, stage:i, alive, 729 days
1715.5
TCGA-XR-A8TC-01A
43 years, female, white, stage:i, alive, 1339 days
1709.3
TCGA-DD-AAVX-01A
38 years, male, asian, stage:ii, alive, 1570 days
1708.2
TCGA-DD-AADK-01A
68 years, female, asian, stage:ii, alive, 1049 days
1706.3
TCGA-O8-A75V-01A
54 years, male, stage:i, alive, 538 days
1705.7
TCGA-ES-A2HS-01A
80 years, male, white, stage:i, dead, 688 days
1699.9
TCGA-5R-AAAM-01A
65 years, female, white, stage:ii, dead, 46 days
1696.6
TCGA-DD-A73G-01A
73 years, female, white, stage:i, alive, 3478 days
1682.4
TCGA-DD-AADJ-01A
70 years, female, asian, stage:i, alive, 1066 days
1677.0
TCGA-DD-AADQ-01A
59 years, male, asian, stage:ii, alive, 436 days
1661.0
TCGA-CC-5262-01A
67 years, male, asian, stage:iiic, dead, 103 days
1659.9
TCGA-ED-A7PY-01A
20 years, female, asian, stage:ii, alive, 390 days
1655.4
TCGA-BC-A110-01A
51 years, female, black or african american, dead, 2116 days
1653.3
TCGA-ED-A459-01A
47 years, male, asian, stage:ii, alive, 910 days
1653.2
TCGA-G3-A3CG-01A
80 years, male, white, stage:i, alive, 673 days
1649.0
TCGA-5C-A9VH-01A
70 years, male, white, stage:i, alive, 322 days
1633.2
TCGA-2Y-A9H7-01A
81 years, female, white, stage:i, alive, 1168 days
1622.7
TCGA-DD-A118-01A
77 years, female, white, stage:ii, alive, 3437 days
1621.8
TCGA-FV-A3R2-01A
75 years, male, white, stage:i, dead, 194 days
1620.9
TCGA-DD-A73C-01A
65 years, female, white, stage:iiia, alive, 701 days
1617.3
TCGA-DD-AAVU-01A
46 years, male, asian, stage:ii, alive, 2202 days
1616.5
TCGA-FV-A3R3-01A
38 years, female, white, stage:i, dead, 366 days
1610.2
TCGA-DD-AADS-01A
63 years, male, asian, stage:i, alive, 474 days
1607.1
TCGA-DD-A1EG-01A
77 years, male, white, stage:i, dead, 1372 days
1604.0
TCGA-G3-A25Z-01A
58 years, male, asian, stage:i, alive, 655 days
1598.2
TCGA-DD-AACO-01A
40 years, male, asian, stage:i, alive, 1876 days
1596.9
TCGA-DD-A113-01A
55 years, female, white, stage:ii, alive, 2425 days
1594.1
TCGA-DD-AADM-01A
58 years, male, asian, stage:ii, dead, 12 days
1591.3
TCGA-CC-A9FS-01A
55 years, male, asian, stage:ii, alive, 211 days
1590.9
TCGA-BD-A3ER-01A
62 years, male, white, stage:ii, alive, 1115 days
1568.8
TCGA-BC-A10S-01A
81 years, male, white, dead, 1423 days
1560.4
TCGA-2Y-A9H6-01A
68 years, female, white, stage:i, alive, 357 days
1551.3
TCGA-DD-AAE2-01A
51 years, male, asian, stage:i, alive, 638 days
1549.4
TCGA-BW-A5NO-01A
50 years, male, black or african american, stage:iiia, alive, 20 days
1546.6
TCGA-DD-A3A1-01A
65 years, male, stage:iiia, dead, 233 days
1540.5
TCGA-DD-A4NI-01A
67 years, male, white, stage:ii, alive, 816 days
1540.3
TCGA-ZS-A9CD-01A
73 years, male, white, stage:ii, dead, 1386 days
1539.8
TCGA-BC-A10R-01A
66 years, female, white, dead, 308 days
1537.3
TCGA-LG-A9QD-01A
68 years, male, white, stage:iiia, alive, 366 days
1533.8
TCGA-DD-AACN-01A
32 years, male, asian, stage:i, alive, 1302 days
1514.9
TCGA-G3-A7M5-01A
76 years, male, asian, stage:i, alive, 447 days
1510.4
TCGA-G3-A7M8-01A
31 years, male, asian, stage:i, alive, 430 days
1509.1
TCGA-EP-A2KA-01A
52 years, female, white, stage:iiia, dead, 627 days
1506.9
TCGA-T1-A6J8-01A
68 years, male, white, alive, 23 days
1505.8
TCGA-ZP-A9D2-01A
51 years, male, white, dead, 765 days
1494.2
TCGA-DD-A3A7-01A
67 years, male, stage:iiib, dead, 419 days
1481.8
TCGA-DD-A4NK-01A
80 years, female, white, stage:iiia, dead, 1210 days
1481.4
TCGA-EP-A2KC-01A
62 years, male, black or african american, stage:i, dead, 19 days
1480.8
TCGA-G3-A5SK-01A
58 years, male, white, stage:i, alive, 744 days
1479.5
TCGA-PD-A5DF-01A
58 years, female, white, stage:iiib, dead, 639 days
1479.2
TCGA-BD-A2L6-01A
69 years, male, white, alive, 1363 days
1476.0
TCGA-4R-AA8I-01A
66 years, male, white, stage:ii, dead, 262 days
1469.2
TCGA-DD-A4NP-01A
32 years, male, white, stage:i, alive, 3308 days
1458.8
TCGA-K7-A5RF-01A
64 years, male, white, stage:i, alive, 631 days
1458.2
TCGA-FV-A495-01A
51 years, female, white, stage:ii, alive, 1 days
1453.7
TCGA-ED-A4XI-01A
58 years, male, asian, stage:ii, alive, 819 days
1450.0
TCGA-DD-A73B-01A
72 years, female, white, stage:i, dead, 283 days
1449.5
TCGA-2Y-A9GX-01A
68 years, male, white, stage:i, alive, 2442 days
1439.7
TCGA-WQ-AB4B-01A
62 years, male, white, stage:ii, alive, 395 days
1439.2
TCGA-FV-A3I1-01A
female, white, stage:ii, dead, 247 days
1438.0
TCGA-BC-4073-01B
73 years, male, white, stage:iiia, alive, 849 days
1434.5
TCGA-DD-A73F-01A
77 years, female, white, stage:i, alive, 1085 days
1431.5
TCGA-BC-A69I-01A
69 years, male, white, stage:i, alive, 387 days
1430.9
TCGA-DD-A4NN-01A
56 years, female, white, stage:i, dead, 899 days
1429.1
TCGA-DD-A115-01A
53 years, male, white, stage:iiia, dead, 2542 days
1427.0
TCGA-G3-AAV2-01A
50 years, male, white, stage:i, alive, 372 days
1426.1
TCGA-FV-A23B-01A
70 years, female, white, stage:ii, dead, 1852 days
1425.6
TCGA-YA-A8S7-01A
69 years, male, white, stage:iiia, dead, 412 days
1423.6
TCGA-DD-A3A9-01A
64 years, female, white, stage:ivb, dead, 931 days
1422.8
TCGA-DD-A1EE-01A
73 years, male, white, stage:iiia, dead, 349 days
1408.0
TCGA-BC-A10U-01A
69 years, male, white, dead, 837 days
1395.4
TCGA-CC-A9FW-01A
68 years, male, asian, stage:iiia, alive, 248 days
1394.4
TCGA-DD-AAVS-01A
56 years, male, asian, stage:i, alive, 1823 days
1393.5
TCGA-DD-A1EB-01A
72 years, female, stage:i, alive, 2017 days
1393.3
TCGA-DD-AAE7-01A
72 years, male, asian, stage:i, alive, 644 days
1376.4
TCGA-RC-A6M5-01A
20 years, female, white, stage:iva, alive, 15 days
1375.6
TCGA-2Y-A9H8-01A
85 years, female, white, dead, 633 days
1374.7
TCGA-ED-A7XO-01A
29 years, male, asian, stage:iiia, alive, 427 days
1374.1
TCGA-MR-A520-01A
58 years, male, white, stage:i, alive, 229 days
1353.7
TCGA-DD-AAE1-01A
52 years, male, asian, stage:i, alive, 552 days
1336.9
TCGA-GJ-A6C0-01A
75 years, female, white, stage:ii, dead, 31 days
1333.8
TCGA-MI-A75I-01A
61 years, male, black or african american, alive, 630 days
1324.8
TCGA-UB-A7ME-01A
51 years, male, asian, stage:i, alive, 486 days
1313.8
TCGA-G3-A3CI-01A
71 years, male, white, stage:i, alive, 180 days
1313.4
TCGA-G3-A25V-01A
68 years, male, white, stage:i, alive, 860 days
1311.4
TCGA-DD-AADF-01A
64 years, female, asian, stage:i, dead, 115 days
1309.6
TCGA-DD-A3A4-01A
37 years, male, white, stage:iiia, dead, 612 days
1308.0
TCGA-UB-A7MA-01A
62 years, female, white, stage:ii, alive, 848 days
1302.6
TCGA-G3-A5SJ-01A
59 years, male, white, stage:i, alive, 698 days
1302.2
TCGA-DD-AADW-01A
48 years, male, asian, stage:i, alive, 587 days
1292.7
TCGA-ED-A8O5-01A
59 years, female, asian, stage:iiia, alive, 406 days
1291.4
TCGA-WX-AA44-01A
64 years, female, white, stage:i, alive, 615 days
1284.3
TCGA-G3-AAUZ-01A
48 years, male, stage:i, alive, 480 days
1282.6
TCGA-DD-AACU-01A
59 years, male, asian, stage:i, alive, 1567 days
1273.7
TCGA-DD-AACK-01A
70 years, male, asian, stage:i, alive, 9 days
1271.6
TCGA-EP-A3JL-01A
76 years, male, white, stage:i, alive, 303 days
1262.8
TCGA-DD-A114-01A
42 years, male, black or african american, stage:ii, dead, 1149 days
1259.7
TCGA-UB-AA0U-01A
60 years, male, white, stage:ii, alive, 327 days
1232.5
TCGA-CC-5261-01A
44 years, male, asian, stage:ii, dead, 97 days
1213.9
TCGA-DD-AAEK-01A
51 years, male, asian, stage:ii, alive, 1067 days
1206.2
TCGA-RC-A7S9-01A
47 years, female, asian, stage:i, alive, 640 days
1201.0
TCGA-DD-A4NA-01A
67 years, female, white, stage:iiic, alive, 1008 days
1198.2
TCGA-DD-AAEH-01A
73 years, male, asian, stage:i, alive, 784 days
1198.1
TCGA-XR-A8TF-01A
74 years, male, white, stage:i, dead, 693 days
1198.0
TCGA-EP-A26S-01A
70 years, male, white, stage:i, alive, 608 days
1194.2
TCGA-DD-AADA-01A
66 years, female, asian, stage:i, alive, 1233 days
1189.8
TCGA-FV-A2QR-01A
male, white, stage:i, dead, 581 days
1189.4
TCGA-DD-AADR-01A
58 years, male, asian, stage:i, alive, 2028 days
1179.8
TCGA-KR-A7K0-01A
65 years, male, white, stage:i, dead, 65 days
1171.4
TCGA-DD-AAD0-01A
73 years, female, asian, stage:i, alive, 137 days
1168.4
TCGA-BC-A10Y-01A
76 years, male, white, dead, 711 days
1166.0
TCGA-K7-A5RG-01A
66 years, male, black or african american, stage:i, alive, 519 days
1165.5
TCGA-BC-A216-01A
62 years, female, white, stage:iiia, alive, 1351 days
1154.4
TCGA-DD-A4NV-01A
61 years, male, white, stage:iiia, alive, 2398 days
1152.2
TCGA-ZP-A9D4-01A
64 years, female, white, alive, 395 days
1138.8
TCGA-DD-A3A8-01A
75 years, male, white, stage:ii, dead, 11 days
1131.6
TCGA-UB-AA0V-01A
69 years, female, white, stage:i, alive, 314 days
1128.0
TCGA-5C-AAPD-01A
61 years, male, asian, stage:ii, alive, 20 days
1119.9
TCGA-DD-AAW1-01A
55 years, male, asian, stage:iiia, alive, 1989 days
1110.6
TCGA-CC-A8HV-01A
51 years, female, asian, stage:ii, dead, 279 days
1108.6
TCGA-DD-A3A3-01A
45 years, male, asian, stage:i, dead, 535 days
1107.8
TCGA-DD-AAD1-01A
51 years, female, asian, stage:i, alive, 564 days
1100.6
TCGA-DD-A39V-01A
77 years, male, white, stage:ii, dead, 643 days
1099.9
TCGA-G3-A7M7-01A
65 years, male, white, stage:i, alive, 361 days
1095.0
TCGA-HP-A5MZ-01A
62 years, male, stage:i, dead, 91 days
1092.7
TCGA-ZP-A9CV-01A
59 years, male, white, dead, 1088 days
1084.5
TCGA-DD-AAW3-01A
69 years, male, asian, stage:i, alive, 1633 days
1070.9
TCGA-G3-A5SM-01A
58 years, male, white, stage:ii, alive, 520 days
1068.6
TCGA-DD-A4NB-01A
25 years, male, white, stage:i, alive, 989 days
1066.3
TCGA-DD-AACD-01A
48 years, male, asian, stage:i, dead, 381 days
1058.7
TCGA-WJ-A86L-01A
68 years, female, white, stage:i, alive, 345 days
1053.3
TCGA-CC-5263-01A
35 years, male, asian, stage:iiia, dead, 129 days
1052.9
TCGA-G3-A25Y-01A
52 years, female, asian, stage:i, dead, 452 days
1051.4
TCGA-DD-AAE0-01A
45 years, female, asian, stage:iiia, alive, 555 days
1047.9
TCGA-DD-AADB-01A
51 years, male, asian, stage:i, alive, 1242 days
1044.6
TCGA-MI-A75G-01A
63 years, male, white, stage:ii, alive, 698 days
1041.7
TCGA-K7-AAU7-01A
61 years, male, white, stage:ii, alive, 359 days
1038.7
TCGA-CC-A8HS-01A
18 years, male, asian, stage:iiic, dead, 300 days
1038.0
TCGA-EP-A3RK-01A
73 years, male, white, stage:iiia, alive, 363 days
1029.7
TCGA-RC-A7SB-01A
53 years, male, asian, stage:ii, alive, 588 days
1027.9
TCGA-DD-A119-01A
40 years, male, asian, stage:iv, dead, 223 days
1027.1
TCGA-BC-A3KF-01A
66 years, female, white, stage:i, alive, 8 days
1024.2
TCGA-G3-A25U-01A
63 years, female, asian, stage:i, alive, 1636 days
1023.9
TCGA-2Y-A9H3-01A
45 years, male, white, stage:ii, alive, 1516 days
1020.3
TCGA-DD-AADG-01A
70 years, male, asian, stage:iiia, alive, 1145 days
1015.1
TCGA-BC-A10Z-01A
62 years, female, white, stage:i, dead, 34 days
1012.0
TCGA-G3-A7M6-01A
60 years, female, white, stage:i, alive, 632 days
1006.0
TCGA-WX-AA47-01A
33 years, female, white, stage:iiia, dead, 556 days
1002.6
TCGA-DD-A4NR-01A
85 years, female, white, stage:i, dead, 9 days
996.4
TCGA-DD-A73A-01A
71 years, male, white, stage:i, alive, 728 days
995.6
TCGA-RC-A6M4-01A
74 years, female, white, stage:iiia, alive, 22 days
993.8
TCGA-DD-AACJ-01A
75 years, male, asian, stage:ii, alive, 2102 days
992.1
TCGA-DD-A4NH-01A
65 years, female, white, stage:iiib, alive, 917 days
991.5
TCGA-BC-4072-01B
74 years, female, white, stage:iiia, dead, 1490 days
990.2
TCGA-WX-AA46-01A
62 years, male, white, stage:ii, alive, 756 days
984.4
TCGA-2Y-A9H0-01A
49 years, male, white, stage:iiia, alive, 3675 days
979.6
TCGA-ED-A97K-01A
54 years, male, asian, stage:iiia, alive, 6 days
975.6
TCGA-K7-A6G5-01A
66 years, male, white, stage:i, alive, 512 days
973.7
TCGA-BC-A8YO-01A
66 years, female, white, stage:iiic, alive, 562 days
972.0
TCGA-DD-A39Y-01A
67 years, male, asian, stage:i, dead, 171 days
968.4
TCGA-2Y-A9H5-01A
59 years, female, white, stage:i, dead, 555 days
963.4
TCGA-CC-5264-01A
71 years, male, asian, stage:iiia, dead, 102 days
954.8
TCGA-CC-A7IL-01A
61 years, male, asian, stage:iiia, dead, 278 days
942.9
TCGA-G3-A5SL-01A
70 years, male, white, stage:ii, alive, 621 days
942.5
TCGA-DD-AACC-01A
61 years, male, asian, stage:i, dead, 1685 days
934.5
TCGA-DD-A11A-01A
67 years, male, black or african american, stage:i, alive, 79 days
931.3
TCGA-DD-AACW-01A
43 years, male, asian, stage:i, alive, 1424 days
931.3
TCGA-DD-AAEB-01A
60 years, male, asian, stage:i, alive, 478 days
924.7
TCGA-G3-AAV3-01A
58 years, female, white, stage:ii, alive, 412 days
903.5
TCGA-UB-A7MC-01A
59 years, male, white, stage:iiia, alive, 500 days
899.8
TCGA-UB-A7MD-01A
67 years, male, black or african american, stage:i, dead, 52 days
895.5
TCGA-XR-A8TE-01A
16 years, male, white, stage:iiia, alive, 925 days
895.5
TCGA-UB-A7MF-01A
57 years, male, white, stage:iiia, dead, 214 days
895.4
TCGA-DD-A4NS-01A
62 years, female, white, stage:i, dead, 2456 days
895.2
TCGA-DD-A1EC-01A
20 years, female, white, stage:i, alive, 602 days
888.4
TCGA-ZP-A9CZ-01A
72 years, male, asian, alive, 706 days
886.9
TCGA-ED-A66Y-01A
51 years, female, asian, stage:iiia, dead, 296 days
872.6
TCGA-DD-AAED-01A
51 years, male, asian, stage:i, alive, 763 days
861.2
TCGA-DD-AAW2-01A
69 years, male, asian, stage:i, alive, 1855 days
857.9
TCGA-DD-A4NF-01A
72 years, male, white, stage:i, alive, 942 days
854.5
TCGA-2Y-A9GS-01A
58 years, male, white, dead, 724 days
853.0
TCGA-DD-A4NJ-01A
54 years, female, white, stage:ii, alive, 928 days
851.9
TCGA-MI-A75H-01A
77 years, male, white, alive, 747 days
846.5
TCGA-BC-A112-01A
80 years, male, white, dead, 153 days
839.5
TCGA-DD-AAVV-01A
56 years, male, asian, stage:ii, alive, 2455 days
836.6
TCGA-UB-A7MB-01A
24 years, male, white, stage:ii, alive, 601 days
835.8
TCGA-EP-A12J-01A
63 years, male, black or african american, stage:i, alive, 570 days
833.2
TCGA-RC-A7SF-01A
66 years, male, asian, stage:i, alive, 579 days
832.7
TCGA-DD-AAD8-01A
73 years, female, asian, stage:i, alive, 1219 days
810.4
TCGA-CC-A3MB-01A
36 years, male, asian, stage:iiia, dead, 315 days
809.3
TCGA-ED-A5KG-01A
60 years, female, asian, stage:ii, alive, 854 days
809.0
TCGA-DD-AADL-01A
58 years, male, asian, stage:i, alive, 636 days
804.7
TCGA-KR-A7K7-01A
61 years, female, white, stage:ii, alive, 951 days
800.3
TCGA-2Y-A9H4-01A
68 years, male, black or african american, stage:i, alive, 1452 days
775.2
TCGA-DD-A1EJ-01A
71 years, female, white, stage:iiic, dead, 1005 days
773.4
TCGA-DD-A4NG-01A
77 years, male, white, stage:iiia, dead, 802 days
768.4
TCGA-DD-AACH-01A
69 years, male, asian, stage:ii, dead, 195 days
768.2
TCGA-FV-A4ZP-01A
78 years, male, white, stage:iiia, dead, 2486 days
755.8
TCGA-DD-AACG-01A
52 years, male, asian, stage:ii, dead, 469 days
740.2
TCGA-CC-A7IH-01A
58 years, male, asian, stage:iiia, alive, 365 days
735.6
TCGA-CC-A3MC-01A
54 years, male, asian, stage:iiia, alive, 363 days
733.9
TCGA-G3-AAV5-01A
67 years, male, white, stage:ii, alive, 354 days
729.4
TCGA-DD-AA3A-01A
81 years, female, white, stage:i, dead, 410 days
722.8
TCGA-G3-A3CH-01A
53 years, male, asian, stage:iiia, alive, 780 days
721.5
TCGA-G3-A3CK-01A
61 years, male, asian, stage:i, alive, 585 days
716.9
TCGA-G3-AAV1-01A
51 years, male, asian, stage:iiic, dead, 359 days
710.5
TCGA-EP-A2KB-01A
46 years, female, white, stage:i, dead, 596 days
698.7
TCGA-DD-AAVR-01A
44 years, male, asian, stage:i, alive, 2513 days
693.9
TCGA-DD-AAEE-01A
55 years, male, asian, stage:i, alive, 810 days
692.9
TCGA-G3-A25X-01A
73 years, male, asian, stage:ii, alive, 1779 days
677.5
TCGA-LG-A9QC-01A
48 years, male, white, stage:i, alive, 425 days
669.6
TCGA-DD-AACX-01A
66 years, male, asian, stage:ii, alive, 170 days
665.3
TCGA-CC-A7IF-01A
59 years, male, asian, stage:iiia, dead, 649 days
662.2
TCGA-DD-AACE-01A
62 years, male, asian, stage:i, alive, 2184 days
654.2
TCGA-CC-A8HT-01A
74 years, male, asian, stage:iiia, dead, 140 days
650.7
TCGA-DD-AAEG-01A
59 years, female, asian, stage:i, alive, 719 days
649.4
TCGA-BC-A69H-01A
64 years, male, white, stage:ii, alive, 444 days
648.2
TCGA-DD-A73E-01A
66 years, male, white, stage:i, alive, 44 days
645.5
TCGA-G3-A25S-01A
64 years, male, white, stage:i, dead, 416 days
645.0
TCGA-DD-A3A2-01A
76 years, female, white, stage:i, dead, 2131 days
644.7
TCGA-CC-5259-01A
60 years, female, asian, stage:iiic, alive, 250 days
644.4
TCGA-CC-A7IG-01A
47 years, male, asian, stage:ii, dead, 299 days
629.6
TCGA-BC-A3KG-01A
68 years, female, white, stage:ii, alive, 680 days
629.5
TCGA-CC-A5UE-01A
48 years, male, asian, stage:iiib, dead, 272 days
615.5
TCGA-2Y-A9HA-01A
70 years, male, white, stage:ii, dead, 36 days
614.5
TCGA-DD-AAEA-01A
65 years, male, asian, stage:i, alive, 575 days
605.0
TCGA-G3-AAV4-01A
83 years, female, white, stage:i, dead, 27 days
603.1
TCGA-ZS-A9CG-01A
55 years, male, white, stage:ii, alive, 341 days
586.6
TCGA-FV-A4ZQ-01A
52 years, male, white, stage:i, alive, 12 days
580.7
TCGA-CC-A3MA-01A
61 years, male, asian, stage:iiia, dead, 303 days
569.7
TCGA-CC-A1HT-01A
50 years, male, asian, stage:iiia, dead, 101 days
564.2
TCGA-DD-AACB-01A
74 years, female, asian, stage:i, alive, 2324 days
563.7
TCGA-DD-A73D-01A
68 years, female, white, stage:ii, alive, 693 days
555.2
TCGA-DD-A4NQ-01A
60 years, male, white, stage:ii, dead, 373 days
550.8
TCGA-2Y-A9H2-01A
64 years, female, white, stage:i, alive, 1731 days
549.1
TCGA-NI-A4U2-01A
71 years, male, white, stage:iiia, dead, 1791 days
540.4
TCGA-CC-A8HU-01A
39 years, female, asian, stage:iiia, dead, 344 days
538.9
TCGA-KR-A7K8-01A
57 years, male, stage:i, alive, 906 days
538.3
TCGA-DD-AADN-01A
59 years, male, asian, stage:i, alive, 898 days
532.6
TCGA-DD-AAE3-01A
50 years, male, asian, stage:i, alive, 566 days
532.1
TCGA-DD-AAC8-01A
72 years, male, asian, stage:i, dead, 16 days
526.3
TCGA-5R-AA1D-01A
17 years, female, white, stage:iiia, alive, 449 days
525.3
TCGA-ED-A82E-01A
60 years, female, asian, stage:iiia, alive, 408 days
524.2
TCGA-ED-A66X-01A
35 years, male, asian, stage:iiia, alive, 406 days
520.7
TCGA-NI-A8LF-01A
74 years, male, white, stage:i, alive, 799 days
500.7
TCGA-DD-AADD-01A
51 years, male, asian, stage:i, alive, 1231 days
498.8
TCGA-DD-A39X-01A
78 years, female, white, stage:i, dead, 1694 days
490.8
TCGA-BC-A10W-01A
50 years, male, asian, dead, 91 days
489.8
TCGA-DD-A1EI-01A
46 years, male, asian, stage:i, alive, 183 days
489.5
TCGA-G3-A7M9-01A
70 years, male, white, stage:iiib, dead, 56 days
488.2
TCGA-XR-A8TD-01A
49 years, female, white, stage:iiib, alive, 1030 days
486.6
TCGA-5R-AA1C-01A
57 years, male, white, stage:ii, alive, 520 days
480.3
TCGA-CC-A5UC-01A
63 years, male, asian, stage:iiia, dead, 347 days
467.9
TCGA-MI-A75C-01A
64 years, male, white, stage:i, alive, 291 days
459.8
TCGA-DD-AADU-01A
60 years, male, asian, stage:ii, alive, 554 days
444.4
TCGA-ED-A8O6-01A
50 years, female, asian, stage:iiia, dead, 56 days
440.8
TCGA-ED-A7PX-01A
48 years, female, asian, stage:ii, alive, 6 days
427.5
TCGA-DD-AACQ-01A
50 years, male, asian, stage:ii, dead, 432 days
426.7
TCGA-DD-A1EF-01A
57 years, female, white, stage:i, dead, 394 days
424.7
TCGA-DD-A39W-01A
29 years, female, white, stage:iii, dead, 827 days
417.6
TCGA-DD-AAD5-01A
54 years, male, asian, stage:i, alive, 1345 days
415.2
TCGA-DD-AACL-01A
66 years, female, asian, stage:i, dead, 107 days
414.4
TCGA-DD-AAVP-01A
48 years, male, asian, stage:i, alive, 2752 days
411.2
TCGA-DD-AADC-01A
53 years, male, asian, stage:i, dead, 425 days
398.8
TCGA-DD-AACA-01A
65 years, male, asian, stage:i, alive, 2301 days
393.4
TCGA-CC-A7IK-01A
59 years, male, asian, stage:iiia, dead, 262 days
375.1
TCGA-RG-A7D4-01A
69 years, male, black or african american, stage:ii, alive, 1098 days
374.3
TCGA-G3-AAV7-01A
38 years, male, asian, stage:ii, alive, 361 days
366.2
TCGA-DD-AACP-01A
65 years, male, asian, stage:i, alive, 415 days
362.2
TCGA-RC-A7SH-01A
42 years, male, asian, stage:ii, alive, 468 days
356.4
TCGA-FV-A3I0-01A
76 years, female, white, stage:ii, alive, 848 days
355.0
TCGA-DD-AAD6-01A
66 years, male, asian, stage:iiia, alive, 672 days
354.2
TCGA-CC-A7II-01A
55 years, male, asian, stage:iiia, alive, 399 days
352.2
TCGA-ED-A7PZ-01A
61 years, male, asian, stage:ii, alive, 6 days
324.7
TCGA-G3-AAV6-01A
53 years, female, white, stage:iiia, dead, 65 days
319.1
TCGA-BC-A10Q-01A
72 years, female, white, dead, 1135 days
302.7
TCGA-2Y-A9GY-01A
64 years, female, white, stage:ii, dead, 757 days
302.5
TCGA-MR-A8JO-01A
34 years, male, white, stage:i, alive, 330 days
301.8
TCGA-WQ-A9G7-01A
female, white, alive, 30 days
299.4
TCGA-5C-A9VG-01A
58 years, male, white, stage:ii, alive, 328 days
297.6
TCGA-GJ-A3OU-01A
59 years, male, white, stage:i, alive, 879 days
281.9
TCGA-DD-AAE6-01A
59 years, female, asian, stage:i, alive, 141 days
271.2
TCGA-CC-5260-01A
61 years, female, asian, stage:iiic, dead, 87 days
267.5
TCGA-DD-AACZ-01A
63 years, female, asian, stage:i, dead, 171 days
265.1
TCGA-DD-A1EL-01A
23 years, male, black or african american, stage:ii, dead, 415 days
261.6
TCGA-DD-A116-01A
68 years, male, asian, stage:iiia, dead, 1622 days
251.3
TCGA-CC-A7IE-01A
57 years, male, asian, stage:iiia, dead, 217 days
242.6
TCGA-CC-A5UD-01A
45 years, male, asian, stage:iiia, dead, 304 days
238.4
TCGA-G3-A25T-01A
45 years, female, white, stage:iiia, alive, 1553 days
230.5
TCGA-RC-A6M6-01A
75 years, male, white, stage:ii, alive, 9 days
160.3
TCGA-DD-AAE9-01A
69 years, male, asian, stage:i, alive, 722 days
68.5
TCGA-CC-A7IJ-01A
56 years, male, asian, stage:ii, alive, 382 days
35.1
TCGA-CC-A3M9-01A
45 years, male, asian, stage:iiia, dead, 300 days
8.5
TCGA-DD-A3A6-01A
72 years, female, white, stage:ii, dead, 3258 days
3.0
TCGA-CC-5258-01A
48 years, male, asian, stage:ii, dead, 129 days
2.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
