MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:28.1 nTPM
HPA:28.1 nTPM
GTEx:27.7 nTPM
FANTOM5:25.6 Scaled Tags Per Million
Pig:5.4 nTPM
Mouse:22.1 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.6
2019 Male, age 18, unknown 30.2
2586 Male, age 75, left hemisphere 29.0
2828 Female, age 72, unknown 28.4
2666 Male, age 74, left hemisphere 28.3
1870 Female, age 42, unknown 27.3
2411 Female, age 72, unknown 26.9
1830 Male, age 51, unknown 26.6
1827 Male, age 72, unknown 26.5
1833 Male, age 53, unknown 26.3
2219 Male, age 76, both hemispheres 26.0
Dorsal raphe nucleus
nTPM: 26.3
2016 Female, age 72, unknown 27.7
1828 Male, age 53, unknown 27.6
2298 Female, age 72, unknown 25.7
2750 Male, age 76, both hemispheres 25.4
2047 Male, age 72, unknown 25.2
Inferior colliculus
nTPM: 25.8
1890 Male, age 53, unknown 27.1
2097 Female, age 72, unknown 25.8
1848 Female, age 42, unknown 25.6
2849 Male, age 72, unknown 24.6
Median raphe nucleus
nTPM: 24.0
2220 Male, age 76, midline 24.0
Pedunculopontine tegmental nucleus
nTPM: 24.8
2334 Male, age 80, both hemispheres 25.1
1921 Female, age 85, both hemispheres 24.8
2338 Male, age 61, both hemispheres 24.6
Periaquaductal grey, anterior
nTPM: 26.7
2502 Female, age 75, unknown 27.6
1947 Male, age 18, unknown 26.8
1795 Male, age 51, unknown 25.8
Periaquaductal grey, dorsal
nTPM: 24.0
2850 Male, age 76, both hemispheres 24.6
1831 Male, age 72, unknown 24.3
2464 Female, age 72, unknown 23.9
1840 Male, age 53, unknown 23.2
Periaquaductal grey, lateral
nTPM: 25.0
2272 Male, age 74, both hemispheres 26.2
2053 Male, age 18, unknown 24.8
2140 Male, age 76, both hemispheres 23.9
Pretectal area
nTPM: 26.1
2007 Male, age 72, unknown 27.9
1817 Female, age 42, unknown 27.5
1816 Male, age 51, unknown 27.3
2273 Male, age 74, both hemispheres 26.9
2316 Male, age 76, right hemisphere 26.5
1815 Male, age 53, unknown 26.4
1944 Female, age 72, unknown 26.4
2667 Female, age 75, unknown 25.6
2825 Male, age 18, unknown 24.6
2224 Female, age 72, unknown 24.3
2407 Male, age 75, both hemispheres 23.9
Red nucleus
nTPM: 28.1
1821 Female, age 72, unknown 30.0
1954 Female, age 42, unknown 29.5
2227 Male, age 72, unknown 29.1
2769 Male, age 72, unknown 28.9
2785 Male, age 18, unknown 28.8
1865 Male, age 51, unknown 28.1
1904 Male, age 53, unknown 28.1
2503 Female, age 72, unknown 28.0
2588 Male, age 74, left hemisphere 27.5
2725 Female, age 75, unknown 26.6
2823 Male, age 76, right hemisphere 26.6
2584 Male, age 75, left hemisphere 25.8
Substantia nigra
nTPM: 27.5
1916 Female, age 42, unknown 29.3
1851 Male, age 51, unknown 29.2
1889 Female, age 72, unknown 28.1
2665 Male, age 74, both hemispheres 28.1
2583 Male, age 75, right hemisphere 27.9
2699 Male, age 18, unknown 27.4
2590 Female, age 75, unknown 26.6
1941 Male, age 53, unknown 26.5
2409 Female, age 72, unknown 26.0
2241 Male, age 72, unknown 25.4
Superior colliculus
nTPM: 26.6
2668 Female, age 75, unknown 28.3
1995 Male, age 72, unknown 28.1
1796 Male, age 53, unknown 26.6
2087 Female, age 72, unknown 26.6
1913 Female, age 42, unknown 26.5
2664 Male, age 75, both hemispheres 26.5
1895 Male, age 76, right hemisphere 26.4
2587 Male, age 74, left hemisphere 25.9
1839 Male, age 51, unknown 25.5
2261 Male, age 18, unknown 25.1
Ventral tegmental area
nTPM: 26.0
2410 Female, age 72, unknown 26.8
1915 Female, age 42, unknown 26.7
1942 Male, age 51, unknown 25.9
2021 Male, age 53, unknown 25.9
2218 Male, age 76, both hemispheres 25.8
2223 Female, age 72, unknown 24.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 27.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.7
Samples: 139

Max nTPM: 45.4
Min nTPM: 17.5
Std nTPM: 5.2
Median nTPM: 27.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 45.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 41.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 39.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 39.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 39.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 39.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 36.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 36.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 36.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 36.1
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 35.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.6
FF:10158-103A5 76 years, female 25.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.4
Pig sample Sample description nTPM
Midbrain
nTPM: 4.7
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.3
Sample A Female 5.6
Sample B Female 4.6
Sample C Male 4.3
Sample D Male 4.3
Periaqueductal gray
nTPM: 4.5
Samples: 3

Max nTPM: 4.7
Min nTPM: 4.2
Sample B Female 4.7
Sample C Male 4.6
Sample D Male 4.2
Substantia nigra
nTPM: 5.4
Samples: 4

Max nTPM: 5.8
Min nTPM: 4.9
Sample A Female 5.2
Sample B Female 5.6
Sample C Male 4.9
Sample D Male 5.8
Superior colliculi
nTPM: 5.5
Samples: 4

Max nTPM: 6.7
Min nTPM: 4.9
Sample A Female 5.2
Sample B Female 6.7
Sample C Male 5.0
Sample D Male 4.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.1
Samples: 4

Max nTPM: 22.6
Min nTPM: 21.1
Sample A Male 22.5
Sample B Male 22.6
Sample C Female 21.1
Sample D Female 22.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
1619 Antisense, RP_040428_01_G01, Mouse strain C57BL/6J (56 days, male) 0.3
1620 Antisense, RP_040428_01_G01, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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