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SNRPD2
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: Medium
Enterocytes: Medium
Enterocytes - Microvilli: Not detected
Goblet cells: Medium
Paneth cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:168.1 nTPM
HPA:167.7 nTPM
GTEx:168.1 nTPM
FANTOM5:41.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA041437
Endocrine cells Medium
Enterocytes Medium
Enterocytes - Microvilli Not detected
Goblet cells Medium
Paneth cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 167.7
overview
Male, age 65
Small intestine sample 232
nTPM: 172.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 172.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 165.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 160.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 168.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 168.1
Samples: 187

Max nTPM: 360.8
Min nTPM: 86.2
Std nTPM: 40.5
Median nTPM: 163.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 360.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 337.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 307.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 274.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 257.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 256.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 256.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 247.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 243.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 229.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 226.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 226.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 223.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 219.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 218.5
GTEX-1192X-2526-SM-59868 50-59 years, male 215.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 210.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 209.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 208.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 207.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 206.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 206.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 206.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 206.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 205.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 205.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 205.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 204.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 204.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 203.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 203.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 202.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 201.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 200.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 200.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 199.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 197.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 197.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 196.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 196.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 193.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 193.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 192.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 192.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 191.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 190.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 190.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 189.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 189.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 188.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 188.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 187.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 186.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 185.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 185.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 184.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 183.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 183.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 181.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 181.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 181.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 181.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 180.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 179.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 179.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 178.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 178.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 177.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 177.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 177.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 176.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 176.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 175.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 175.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 175.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 173.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 173.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 172.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 172.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 170.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 170.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 170.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 169.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 169.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 168.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 167.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 167.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 167.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 166.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 166.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 164.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 164.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 163.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 163.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 163.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 163.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 162.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 162.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 161.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 160.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 160.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 159.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 159.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 159.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 159.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 159.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 158.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 157.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 156.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 156.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 155.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 155.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 154.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 154.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 153.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 153.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 153.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 153.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 151.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 151.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 151.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 150.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 149.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 148.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 148.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 148.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 148.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 147.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 146.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 146.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 145.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 144.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 144.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 144.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 143.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 143.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 143.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 143.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 142.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 141.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 140.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 140.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 139.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 138.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 138.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 138.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 138.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 137.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 136.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 135.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 135.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 134.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 133.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 132.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 131.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 131.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 131.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 130.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 129.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 126.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 125.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 125.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 124.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 124.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 123.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 123.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 123.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 122.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 121.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 120.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 118.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 117.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 117.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 116.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 115.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 115.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 115.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 113.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 112.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 111.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 110.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 108.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 107.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 103.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 102.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 95.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 86.2
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 41.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 41.2
FF:10024-101D6 15,40,85 years, mixed 41.2

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