MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:35.4 nTPM
HPA:35.4 nTPM
GTEx:33.2 nTPM
FANTOM5:86.2 Scaled Tags Per Million
Pig:46.8 nTPM
Mouse:120.1 nTPM
Allen mouse:5.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.8
2219 Male, age 76, both hemispheres 44.6
2411 Female, age 72, unknown 39.9
2019 Male, age 18, unknown 38.0
1830 Male, age 51, unknown 33.7
1833 Male, age 53, unknown 33.6
2666 Male, age 74, left hemisphere 33.1
2586 Male, age 75, left hemisphere 28.7
1870 Female, age 42, unknown 28.6
1827 Male, age 72, unknown 24.1
2828 Female, age 72, unknown 23.5
Dorsal raphe nucleus
nTPM: 29.9
2750 Male, age 76, both hemispheres 36.8
2047 Male, age 72, unknown 33.4
1828 Male, age 53, unknown 32.6
2298 Female, age 72, unknown 25.8
2016 Female, age 72, unknown 20.8
Inferior colliculus
nTPM: 25.7
1848 Female, age 42, unknown 28.8
1890 Male, age 53, unknown 27.9
2097 Female, age 72, unknown 23.3
2849 Male, age 72, unknown 22.7
Median raphe nucleus
nTPM: 35.4
2220 Male, age 76, midline 35.4
Pedunculopontine tegmental nucleus
nTPM: 32.0
2334 Male, age 80, both hemispheres 36.5
2338 Male, age 61, both hemispheres 29.8
1921 Female, age 85, both hemispheres 29.7
Periaquaductal grey, anterior
nTPM: 24.0
2502 Female, age 75, unknown 24.7
1947 Male, age 18, unknown 24.5
1795 Male, age 51, unknown 22.6
Periaquaductal grey, dorsal
nTPM: 21.8
2464 Female, age 72, unknown 26.1
1831 Male, age 72, unknown 25.0
1840 Male, age 53, unknown 20.4
2850 Male, age 76, both hemispheres 15.7
Periaquaductal grey, lateral
nTPM: 22.2
2272 Male, age 74, both hemispheres 28.7
2053 Male, age 18, unknown 20.0
2140 Male, age 76, both hemispheres 18.0
Pretectal area
nTPM: 26.5
2007 Male, age 72, unknown 33.1
1944 Female, age 72, unknown 31.0
1817 Female, age 42, unknown 29.7
1815 Male, age 53, unknown 29.0
2407 Male, age 75, both hemispheres 26.7
2316 Male, age 76, right hemisphere 25.6
2224 Female, age 72, unknown 24.4
2825 Male, age 18, unknown 24.4
1816 Male, age 51, unknown 23.8
2667 Female, age 75, unknown 23.6
2273 Male, age 74, both hemispheres 20.5
Red nucleus
nTPM: 35.1
2588 Male, age 74, left hemisphere 39.9
2725 Female, age 75, unknown 39.8
2785 Male, age 18, unknown 38.5
1904 Male, age 53, unknown 36.5
2823 Male, age 76, right hemisphere 35.5
2769 Male, age 72, unknown 35.3
1821 Female, age 72, unknown 35.0
1865 Male, age 51, unknown 34.9
2503 Female, age 72, unknown 34.9
2227 Male, age 72, unknown 34.0
2584 Male, age 75, left hemisphere 32.9
1954 Female, age 42, unknown 24.1
Substantia nigra
nTPM: 34.8
1851 Male, age 51, unknown 41.3
1916 Female, age 42, unknown 40.7
1941 Male, age 53, unknown 36.7
2241 Male, age 72, unknown 36.6
2699 Male, age 18, unknown 36.1
2665 Male, age 74, both hemispheres 35.5
1889 Female, age 72, unknown 34.4
2409 Female, age 72, unknown 31.0
2583 Male, age 75, right hemisphere 29.6
2590 Female, age 75, unknown 25.9
Superior colliculus
nTPM: 28.5
1895 Male, age 76, right hemisphere 36.2
2668 Female, age 75, unknown 35.2
1913 Female, age 42, unknown 31.1
2587 Male, age 74, left hemisphere 30.7
2087 Female, age 72, unknown 29.4
1839 Male, age 51, unknown 28.4
1796 Male, age 53, unknown 25.8
1995 Male, age 72, unknown 24.2
2261 Male, age 18, unknown 23.2
2664 Male, age 75, both hemispheres 20.4
Ventral tegmental area
nTPM: 33.4
2410 Female, age 72, unknown 48.1
2218 Male, age 76, both hemispheres 36.7
1915 Female, age 42, unknown 33.2
1942 Male, age 51, unknown 29.9
2223 Female, age 72, unknown 28.2
2021 Male, age 53, unknown 24.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.2
Samples: 139

Max nTPM: 76.1
Min nTPM: 6.9
Std nTPM: 15.3
Median nTPM: 28.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 76.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 73.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 73.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 72.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 70.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 66.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 66.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 66.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 65.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 63.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 62.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 86.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.2
FF:10158-103A5 76 years, female 86.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.8
Pig sample Sample description nTPM
Midbrain
nTPM: 44.1
Samples: 4

Max nTPM: 56.7
Min nTPM: 36.2
Sample A Female 56.7
Sample B Female 44.1
Sample C Male 39.3
Sample D Male 36.2
Periaqueductal gray
nTPM: 33.0
Samples: 3

Max nTPM: 38.0
Min nTPM: 27.7
Sample B Female 38.0
Sample C Male 33.4
Sample D Male 27.7
Substantia nigra
nTPM: 42.8
Samples: 4

Max nTPM: 49.4
Min nTPM: 32.5
Sample A Female 49.4
Sample B Female 32.5
Sample C Male 46.5
Sample D Male 42.7
Superior colliculi
nTPM: 46.8
Samples: 4

Max nTPM: 49.3
Min nTPM: 42.9
Sample A Female 49.3
Sample B Female 45.7
Sample C Male 49.1
Sample D Male 42.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 120.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 120.1
Samples: 4

Max nTPM: 134.2
Min nTPM: 111.6
Sample A Male 134.2
Sample B Male 111.6
Sample C Female 112.5
Sample D Female 122.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.5
69014854 Antisense, RP_050310_01_H01, Mouse strain C57BL/6J (56 days, male) 5.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.