BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:18.6 nTPM
HPA:18.6 nTPM
GTEx:21.2 nTPM
FANTOM5:43.0 Scaled Tags Per Million
Pig:30.8 nTPM
Mouse:43.6 nTPM
Allen mouse:7.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 18.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 17.1
2846 Female, age 79, unknown 18.4
1854 Male, age 80, left hemisphere 18.3
2290 Female, age 72, unknown 17.8
1857 Female, age 85, left hemisphere 17.6
1781 Male, age 74, unknown 17.1
2288 Male, age 75, left hemisphere 16.6
2481 Female, age 94, left hemisphere 15.9
2289 Male, age 61, right hemisphere 15.1
Claustrum
nTPM: 14.1
2392 Female, age 94, both hemispheres 15.3
2491 Male, age 75, both hemispheres 15.2
1956 Male, age 74, unknown 14.2
2198 Male, age 80, both hemispheres 14.2
2292 Female, age 85, both hemispheres 14.1
2284 Female, age 91, both hemispheres 14.0
2196 Female, age 79, unknown 13.7
2645 Female, age 72, unknown 13.6
2568 Male, age 61, both hemispheres 13.1
Globus pallidus, externus
nTPM: 16.3
2772 Female, age 79, unknown 17.3
2395 Male, age 75, both hemispheres 17.0
2567 Female, age 72, unknown 16.4
2646 Male, age 61, right hemisphere 15.7
1996 Male, age 80, right hemisphere 14.9
Globus pallidus, internus
nTPM: 15.8
2483 Female, age 94, right hemisphere 17.3
2287 Male, age 75, right hemisphere 16.3
1818 Male, age 74, unknown 15.9
2037 Male, age 80, right hemisphere 15.5
2778 Female, age 91, both hemispheres 15.5
2566 Female, age 72, unknown 15.3
2111 Female, age 85, right hemisphere 14.8
Nucleus accumbens
nTPM: 15.7
1856 Female, age 91, right hemisphere 17.7
1806 Female, age 85, left hemisphere 15.9
2698 Female, age 72, unknown 15.9
1783 Male, age 74, unknown 15.8
2286 Male, age 75, left hemisphere 15.4
2391 Female, age 94, left hemisphere 15.3
2824 Male, age 61, right hemisphere 15.3
2732 Male, age 80, right hemisphere 14.4
Nucleus basalis of Meynert
nTPM: 17.6
2393 Male, age 80, right hemisphere 20.2
2484 Female, age 94, left hemisphere 17.9
2821 Male, age 75, both hemispheres 16.6
2569 Male, age 61, both hemispheres 15.7
Nucleus of the diagonal band
nTPM: 14.4
1812 Female, age 91, both hemispheres 15.1
2775 Male, age 80, right hemisphere 14.7
1979 Male, age 74, unknown 14.5
2029 Male, age 61, right hemisphere 14.1
2195 Female, age 85, both hemispheres 13.5
Olfactory tubercle
nTPM: 15.2
2856 Male, age 75, right hemisphere 15.6
1998 Female, age 91, both hemispheres 15.5
1846 Male, age 80, right hemisphere 14.9
2487 Female, age 94, left hemisphere 14.5
Putamen
nTPM: 18.6
2647 Male, age 75, left hemisphere 20.3
2466 Female, age 79, unknown 19.3
2489 Female, age 72, unknown 19.3
1838 Male, age 80, right hemisphere 18.9
1829 Male, age 74, unknown 18.8
1937 Female, age 91, right hemisphere 17.7
2482 Female, age 94, left hemisphere 16.3
Septal nuclei
nTPM: 14.5
2199 Male, age 80, right hemisphere 15.7
2394 Male, age 61, left hemisphere 15.1
2031 Female, age 72, unknown 14.8
2009 Female, age 91, both hemispheres 14.4
2629 Female, age 94, right hemisphere 14.3
2059 Female, age 85, both hemispheres 13.9
1960 Male, age 74, unknown 13.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 21.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 18.5
Samples: 246

Max nTPM: 60.8
Min nTPM: 2.9
Std nTPM: 7.7
Median nTPM: 17.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 60.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 51.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 44.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 39.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 37.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 36.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 35.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 35.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 33.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 33.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 32.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 14.7
Samples: 246

Max nTPM: 63.3
Min nTPM: 4.0
Std nTPM: 6.7
Median nTPM: 13.2
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 63.3
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 51.5
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 48.1
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 37.1
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 34.6
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 31.6
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 30.8
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 28.4
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 27.9
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 27.9
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 27.2
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Brain - Putamen (basal ganglia)
Average nTPM: 21.2
Samples: 205

Max nTPM: 54.4
Min nTPM: 5.0
Std nTPM: 9.0
Median nTPM: 19.2
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 54.4
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 54.4
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 47.9
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 46.2
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 46.1
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 44.2
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 42.9
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 42.0
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 41.1
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 40.6
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 40.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 22.4
FF:10164-103B2 76 years, female 22.4
Globus pallidus
Scaled Tags Per Million: 38.5
FF:10175-103C4 60 years, female 55.2
FF:10161-103A8 76 years, female 21.8
Nucleus accumbens
Scaled Tags Per Million: 43.0
FF:10037-101F1 23-56 years, mixed 43.0
Putamen
Scaled Tags Per Million: 32.2
FF:10176-103C5 60 years, female 32.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 30.8
Pig sample Sample description nTPM
Caudate
nTPM: 23.9
Samples: 4

Max nTPM: 26.8
Min nTPM: 21.2
Sample A Female 21.2
Sample B Female 24.0
Sample C Male 23.7
Sample D Male 26.8
Putamen
nTPM: 30.8
Samples: 4

Max nTPM: 42.1
Min nTPM: 21.4
Sample A Female 21.4
Sample B Female 34.3
Sample C Male 42.1
Sample D Male 25.4
Septum
nTPM: 21.3
Samples: 4

Max nTPM: 22.9
Min nTPM: 19.3
Sample A Female 19.3
Sample B Female 22.9
Sample C Male 21.6
Sample D Male 21.2
Ventral pallidum
nTPM: 22.7
Samples: 4

Max nTPM: 24.0
Min nTPM: 20.7
Sample A Female 24.0
Sample B Female 22.7
Sample C Male 23.3
Sample D Male 20.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 43.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 41.7
Samples: 4

Max nTPM: 45.4
Min nTPM: 35.8
Sample A Male 42.2
Sample B Male 35.8
Sample C Female 45.4
Sample D Female 43.5
Septum
nTPM: 35.8
Samples: 4

Max nTPM: 37.7
Min nTPM: 33.0
Sample A Male 33.0
Sample B Male 37.7
Sample C Female 37.1
Sample D Female 35.3
Ventral forebrain
nTPM: 43.6
Samples: 4

Max nTPM: 48.6
Min nTPM: 37.8
Sample A Male 48.6
Sample B Male 37.8
Sample C Female 42.9
Sample D Female 45.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 7.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 7.6
71489800 Antisense, RP_050614_03_G09, Mouse strain C57BL/6J (56 days, male) 7.6
Pallidum
Expression energy: 5.5
71489800 Antisense, RP_050614_03_G09, Mouse strain C57BL/6J (56 days, male) 5.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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