MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:113.7 nTPM
HPA:113.7 nTPM
GTEx:150.1 nTPM
FANTOM5:84.4 Scaled Tags Per Million
Mouse:27.9 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 113.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 103.5
2586 Male, age 75, left hemisphere 129.6
2666 Male, age 74, left hemisphere 113.4
2828 Female, age 72, unknown 112.9
2019 Male, age 18, unknown 101.7
1833 Male, age 53, unknown 101.4
1830 Male, age 51, unknown 100.2
1870 Female, age 42, unknown 99.5
2411 Female, age 72, unknown 99.2
1827 Male, age 72, unknown 91.1
2219 Male, age 76, both hemispheres 86.1
Dorsal raphe nucleus
nTPM: 90.3
2016 Female, age 72, unknown 99.2
2750 Male, age 76, both hemispheres 96.0
1828 Male, age 53, unknown 89.3
2047 Male, age 72, unknown 86.3
2298 Female, age 72, unknown 80.4
Inferior colliculus
nTPM: 87.0
1890 Male, age 53, unknown 90.2
1848 Female, age 42, unknown 89.7
2849 Male, age 72, unknown 85.8
2097 Female, age 72, unknown 82.4
Median raphe nucleus
nTPM: 80.0
2220 Male, age 76, midline 80.0
Pedunculopontine tegmental nucleus
nTPM: 87.5
2334 Male, age 80, both hemispheres 92.2
2338 Male, age 61, both hemispheres 87.1
1921 Female, age 85, both hemispheres 83.0
Periaquaductal grey, anterior
nTPM: 96.4
2502 Female, age 75, unknown 104.3
1795 Male, age 51, unknown 92.9
1947 Male, age 18, unknown 91.9
Periaquaductal grey, dorsal
nTPM: 84.2
2464 Female, age 72, unknown 92.1
1831 Male, age 72, unknown 88.6
1840 Male, age 53, unknown 79.2
2850 Male, age 76, both hemispheres 77.0
Periaquaductal grey, lateral
nTPM: 85.6
2053 Male, age 18, unknown 90.1
2272 Male, age 74, both hemispheres 84.8
2140 Male, age 76, both hemispheres 82.0
Pretectal area
nTPM: 88.9
2316 Male, age 76, right hemisphere 99.1
1815 Male, age 53, unknown 96.6
2407 Male, age 75, both hemispheres 94.4
2007 Male, age 72, unknown 93.2
1817 Female, age 42, unknown 92.9
2825 Male, age 18, unknown 88.8
1816 Male, age 51, unknown 85.1
1944 Female, age 72, unknown 84.0
2273 Male, age 74, both hemispheres 82.7
2224 Female, age 72, unknown 81.3
2667 Female, age 75, unknown 79.5
Red nucleus
nTPM: 113.7
2503 Female, age 72, unknown 129.4
2588 Male, age 74, left hemisphere 127.5
2227 Male, age 72, unknown 120.6
2769 Male, age 72, unknown 120.5
1904 Male, age 53, unknown 120.0
2785 Male, age 18, unknown 113.5
1865 Male, age 51, unknown 111.4
1954 Female, age 42, unknown 109.8
2584 Male, age 75, left hemisphere 107.9
2725 Female, age 75, unknown 104.8
1821 Female, age 72, unknown 100.3
2823 Male, age 76, right hemisphere 98.6
Substantia nigra
nTPM: 92.9
2590 Female, age 75, unknown 104.4
2583 Male, age 75, right hemisphere 104.0
2665 Male, age 74, both hemispheres 100.0
1851 Male, age 51, unknown 98.2
2699 Male, age 18, unknown 94.5
2409 Female, age 72, unknown 91.3
1889 Female, age 72, unknown 88.9
1916 Female, age 42, unknown 86.5
1941 Male, age 53, unknown 85.2
2241 Male, age 72, unknown 76.4
Superior colliculus
nTPM: 98.3
1995 Male, age 72, unknown 116.2
2664 Male, age 75, both hemispheres 105.8
1913 Female, age 42, unknown 105.7
2587 Male, age 74, left hemisphere 102.1
1839 Male, age 51, unknown 97.6
2668 Female, age 75, unknown 96.4
1796 Male, age 53, unknown 94.8
2261 Male, age 18, unknown 93.2
2087 Female, age 72, unknown 87.5
1895 Male, age 76, right hemisphere 83.4
Ventral tegmental area
nTPM: 94.0
1942 Male, age 51, unknown 97.8
2410 Female, age 72, unknown 97.0
2223 Female, age 72, unknown 95.4
2021 Male, age 53, unknown 94.7
1915 Female, age 42, unknown 93.0
2218 Male, age 76, both hemispheres 86.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 150.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 150.1
Samples: 139

Max nTPM: 409.9
Min nTPM: 35.2
Std nTPM: 77.4
Median nTPM: 128.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 409.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 397.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 394.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 376.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 349.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 333.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 317.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 313.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 290.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 288.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 285.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.4
FF:10158-103A5 76 years, female 84.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.9
Samples: 4

Max nTPM: 32.8
Min nTPM: 25.0
Sample A Male 32.8
Sample B Male 26.5
Sample C Female 25.0
Sample D Female 27.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
76081088 Antisense, RP_060608_04_A09, Mouse strain C57BL/6J (56 days, male) 0.6

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