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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:119.6 nTPM
HPA:119.6 nTPM
GTEx:173.2 nTPM
FANTOM5:74.8 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 119.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 100.6
2565 Male, age 75, midline 115.7
2194 Female, age 79, both hemispheres 98.4
1981 Female, age 72, midline 98.0
2816 Male, age 47, midline 97.3
2048 Male, age 55, midline 93.6
Cervical spinal cord, dorsal horn
nTPM: 93.4
2173 Female, age 72, unknown 102.8
2296 Male, age 66, both hemispheres 100.4
1877 Male, age 55, unknown 96.8
2069 Male, age 47, both hemispheres 93.0
2297 Male, age 75, both hemispheres 86.2
2721 Male, age 90, both hemispheres 81.3
Cervical spinal cord, ventral horn
nTPM: 119.6
2480 Male, age 75, both hemispheres 150.9
2809 Male, age 90, both hemispheres 143.8
2295 Male, age 66, both hemispheres 120.3
2068 Male, age 55, unknown 106.5
2820 Female, age 79, both hemispheres 101.0
2098 Female, age 72, unknown 95.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 173.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 173.2
Samples: 159

Max nTPM: 558.9
Min nTPM: 56.8
Std nTPM: 79.9
Median nTPM: 158.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 558.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 409.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 395.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 376.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 375.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 372.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 361.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 339.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 332.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 321.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 312.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 308.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 304.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 291.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 284.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 281.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 272.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 271.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 270.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 269.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 261.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 259.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 257.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 257.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 255.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 243.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 239.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 235.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 233.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 233.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 232.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 228.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 221.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 221.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 217.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 212.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 209.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 208.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 205.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 202.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 201.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 201.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 199.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 198.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 196.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 194.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 193.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 189.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 185.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 184.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 182.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 180.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 177.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 177.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 177.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 177.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 177.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 176.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 176.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 175.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 175.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 175.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 174.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 173.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 173.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 172.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 171.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 171.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 170.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 169.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 167.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 166.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 165.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 164.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 164.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 163.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 160.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 160.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 160.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 158.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 157.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 157.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 154.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 152.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 152.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 147.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 146.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 146.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 145.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 143.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 143.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 142.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 142.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 141.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 140.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 139.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 139.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 137.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 136.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 134.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 133.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 133.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 132.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 132.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 131.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 129.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 129.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 128.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 128.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 124.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 124.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 124.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 123.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 123.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 123.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 120.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 120.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 119.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 117.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 116.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 116.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 115.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 114.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 114.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 113.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 113.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 112.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 112.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 112.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 111.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 110.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 108.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 107.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 105.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 104.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 102.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 101.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 100.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 100.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 98.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 96.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 95.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 94.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 93.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 92.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 89.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 89.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 88.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 81.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 81.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 80.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 79.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 78.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 71.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 64.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 64.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 59.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 57.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 56.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 74.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 74.8
FF:10181-103D1 60 years, female 83.9
FF:10159-103A6 76 years, female 65.7

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