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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:147.6 nTPM
HPA:147.6 nTPM
GTEx:230.5 nTPM
FANTOM5:513.8 Scaled Tags Per Million
Pig:77.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 147.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 141.6
1981 Female, age 72, midline 157.8
2048 Male, age 55, midline 147.7
2194 Female, age 79, both hemispheres 135.8
2816 Male, age 47, midline 134.7
2565 Male, age 75, midline 132.0
Cervical spinal cord, dorsal horn
nTPM: 147.6
2173 Female, age 72, unknown 172.6
2296 Male, age 66, both hemispheres 169.2
2069 Male, age 47, both hemispheres 150.6
1877 Male, age 55, unknown 134.4
2297 Male, age 75, both hemispheres 132.1
2721 Male, age 90, both hemispheres 126.7
Cervical spinal cord, ventral horn
nTPM: 147.5
2098 Female, age 72, unknown 164.5
2480 Male, age 75, both hemispheres 159.5
2295 Male, age 66, both hemispheres 150.7
2809 Male, age 90, both hemispheres 147.3
2068 Male, age 55, unknown 134.4
2820 Female, age 79, both hemispheres 128.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 230.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 230.5
Samples: 159

Max nTPM: 381.8
Min nTPM: 109.0
Std nTPM: 56.2
Median nTPM: 220.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 381.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 378.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 362.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 355.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 353.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 338.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 337.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 336.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 326.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 325.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 325.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 319.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 318.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 313.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 312.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 312.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 310.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 302.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 301.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 300.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 300.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 299.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 298.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 295.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 292.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 292.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 291.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 291.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 291.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 284.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 283.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 282.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 282.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 282.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 281.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 279.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 278.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 277.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 276.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 275.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 274.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 272.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 269.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 266.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 265.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 264.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 257.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 256.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 253.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 253.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 251.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 250.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 249.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 249.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 246.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 246.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 246.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 246.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 245.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 244.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 241.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 239.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 236.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 235.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 235.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 234.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 234.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 233.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 232.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 230.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 230.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 230.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 229.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 227.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 227.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 227.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 224.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 224.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 220.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 220.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 219.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 218.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 218.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 216.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 216.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 216.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 215.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 213.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 211.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 211.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 210.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 209.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 208.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 207.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 206.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 205.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 205.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 203.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 202.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 201.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 199.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 199.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 199.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 198.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 197.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 197.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 197.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 196.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 196.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 196.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 194.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 194.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 194.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 193.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 193.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 193.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 192.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 192.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 190.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 190.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 189.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 188.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 188.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 186.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 186.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 185.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 183.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 181.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 181.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 178.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 175.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 175.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 174.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 173.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 172.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 172.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 172.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 170.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 168.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 167.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 167.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 166.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 165.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 165.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 164.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 163.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 162.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 156.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 154.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 154.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 152.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 152.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 151.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 146.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 145.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 134.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 130.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 129.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 109.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 513.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 513.8
FF:10181-103D1 60 years, female 772.9
FF:10159-103A6 76 years, female 254.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 77.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 75.8
Samples: 4

Max nTPM: 86.1
Min nTPM: 68.4
Sample A Female 69.1
Sample B Female 86.1
Sample C Male 79.4
Sample D Male 68.4
Ventral spinal cord
nTPM: 77.1
Samples: 4

Max nTPM: 87.0
Min nTPM: 66.2
Sample A Female 66.2
Sample B Female 83.7
Sample C Male 71.5
Sample D Male 87.0

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