MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:443.3 nTPM
HPA:443.3 nTPM
GTEx:333.1 nTPM
FANTOM5:378.4 Scaled Tags Per Million
Pig:380.8 nTPM
Mouse:435.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 443.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 406.2
2219 Male, age 76, both hemispheres 420.3
1870 Female, age 42, unknown 416.0
1827 Male, age 72, unknown 413.6
1833 Male, age 53, unknown 409.0
2828 Female, age 72, unknown 406.0
2666 Male, age 74, left hemisphere 404.0
1830 Male, age 51, unknown 403.6
2411 Female, age 72, unknown 402.6
2019 Male, age 18, unknown 394.2
2586 Male, age 75, left hemisphere 392.3
Dorsal raphe nucleus
nTPM: 404.4
2750 Male, age 76, both hemispheres 413.6
2047 Male, age 72, unknown 412.2
1828 Male, age 53, unknown 405.5
2298 Female, age 72, unknown 400.8
2016 Female, age 72, unknown 389.7
Inferior colliculus
nTPM: 409.4
2849 Male, age 72, unknown 428.1
1848 Female, age 42, unknown 411.2
1890 Male, age 53, unknown 400.9
2097 Female, age 72, unknown 397.4
Median raphe nucleus
nTPM: 443.3
2220 Male, age 76, midline 443.3
Pedunculopontine tegmental nucleus
nTPM: 427.7
2338 Male, age 61, both hemispheres 437.2
2334 Male, age 80, both hemispheres 427.7
1921 Female, age 85, both hemispheres 418.1
Periaquaductal grey, anterior
nTPM: 414.5
1947 Male, age 18, unknown 420.3
1795 Male, age 51, unknown 417.6
2502 Female, age 75, unknown 405.5
Periaquaductal grey, dorsal
nTPM: 406.8
2850 Male, age 76, both hemispheres 425.7
1840 Male, age 53, unknown 405.7
1831 Male, age 72, unknown 402.6
2464 Female, age 72, unknown 393.3
Periaquaductal grey, lateral
nTPM: 401.8
2272 Male, age 74, both hemispheres 405.5
2140 Male, age 76, both hemispheres 401.2
2053 Male, age 18, unknown 398.8
Pretectal area
nTPM: 413.9
1817 Female, age 42, unknown 430.7
1944 Female, age 72, unknown 430.3
1816 Male, age 51, unknown 420.2
1815 Male, age 53, unknown 417.6
2007 Male, age 72, unknown 416.5
2667 Female, age 75, unknown 415.7
2224 Female, age 72, unknown 414.6
2825 Male, age 18, unknown 411.2
2407 Male, age 75, both hemispheres 406.3
2273 Male, age 74, both hemispheres 402.6
2316 Male, age 76, right hemisphere 386.9
Red nucleus
nTPM: 401.8
2725 Female, age 75, unknown 415.4
1821 Female, age 72, unknown 405.8
1865 Male, age 51, unknown 403.9
2785 Male, age 18, unknown 403.5
2823 Male, age 76, right hemisphere 403.5
2584 Male, age 75, left hemisphere 402.1
2227 Male, age 72, unknown 400.2
2503 Female, age 72, unknown 399.7
2769 Male, age 72, unknown 399.2
1954 Female, age 42, unknown 398.0
2588 Male, age 74, left hemisphere 395.4
1904 Male, age 53, unknown 394.6
Substantia nigra
nTPM: 419.1
1916 Female, age 42, unknown 441.8
1941 Male, age 53, unknown 434.3
1889 Female, age 72, unknown 431.7
2699 Male, age 18, unknown 429.4
1851 Male, age 51, unknown 417.9
2665 Male, age 74, both hemispheres 414.1
2409 Female, age 72, unknown 413.8
2241 Male, age 72, unknown 404.8
2590 Female, age 75, unknown 402.5
2583 Male, age 75, right hemisphere 400.1
Superior colliculus
nTPM: 406.4
2587 Male, age 74, left hemisphere 418.4
1796 Male, age 53, unknown 414.4
2668 Female, age 75, unknown 413.4
1895 Male, age 76, right hemisphere 409.7
2261 Male, age 18, unknown 406.9
2087 Female, age 72, unknown 406.8
1913 Female, age 42, unknown 405.5
1839 Male, age 51, unknown 401.7
2664 Male, age 75, both hemispheres 395.6
1995 Male, age 72, unknown 391.7
Ventral tegmental area
nTPM: 414.7
2218 Male, age 76, both hemispheres 435.9
1915 Female, age 42, unknown 421.8
2223 Female, age 72, unknown 412.6
2410 Female, age 72, unknown 409.8
1942 Male, age 51, unknown 408.4
2021 Male, age 53, unknown 399.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 333.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 333.1
Samples: 139

Max nTPM: 676.9
Min nTPM: 191.5
Std nTPM: 84.2
Median nTPM: 317.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 676.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 577.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 568.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 531.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 511.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 494.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 481.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 480.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 478.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 476.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 472.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 378.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 378.4
FF:10158-103A5 76 years, female 378.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 380.8
Pig sample Sample description nTPM
Midbrain
nTPM: 374.6
Samples: 4

Max nTPM: 424.0
Min nTPM: 328.5
Sample A Female 328.5
Sample B Female 424.0
Sample C Male 367.3
Sample D Male 378.5
Periaqueductal gray
nTPM: 371.7
Samples: 3

Max nTPM: 418.3
Min nTPM: 332.1
Sample B Female 364.6
Sample C Male 418.3
Sample D Male 332.1
Substantia nigra
nTPM: 380.8
Samples: 4

Max nTPM: 496.3
Min nTPM: 256.3
Sample A Female 496.3
Sample B Female 303.0
Sample C Male 467.6
Sample D Male 256.3
Superior colliculi
nTPM: 369.3
Samples: 4

Max nTPM: 474.3
Min nTPM: 248.2
Sample A Female 474.3
Sample B Female 248.2
Sample C Male 376.1
Sample D Male 378.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 435.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 435.7
Samples: 4

Max nTPM: 462.3
Min nTPM: 415.6
Sample A Male 441.9
Sample B Male 423.1
Sample C Female 415.6
Sample D Female 462.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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