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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:164.8 nTPM
HPA:164.8 nTPM
GTEx:162.1 nTPM
FANTOM5:48.5 Scaled Tags Per Million
Pig:70.2 nTPM
Mouse:97.9 nTPM
Allen mouse:4.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 164.8
Sample id Sample description nTPM
Amygdala
nTPM: 164.8
2695 Female, age 67, right hemisphere 168.1
1987 Female, age 91, left hemisphere 165.4
2814 Male, age 76, right hemisphere 164.6
2517 Female, age 94, left hemisphere 163.5
2514 Male, age 75, right hemisphere 162.4
Basal amygdala
nTPM: 160.1
2609 Male, age 75, right hemisphere 161.9
2685 Female, age 94, left hemisphere 161.5
2243 Female, age 91, right hemisphere 160.7
2110 Male, age 80, left hemisphere 160.5
2827 Female, age 67, right hemisphere 158.3
1955 Male, age 76, both hemispheres 157.9
Central amygdala
nTPM: 163.9
2826 Female, age 94, left hemisphere 173.2
1905 Male, age 76, both hemispheres 168.1
2515 Male, age 75, right hemisphere 165.1
2239 Male, age 80, left hemisphere 159.2
2701 Female, age 91, right hemisphere 153.7
Corticomedial amygdala
nTPM: 160.1
2428 Male, age 75, right hemisphere 165.4
2829 Male, age 80, left hemisphere 163.0
2242 Female, age 91, right hemisphere 161.2
2429 Female, age 94, left hemisphere 159.4
2535 Female, age 67, right hemisphere 156.7
2240 Male, age 76, both hemispheres 154.9
Lateral amygdala
nTPM: 163.2
2534 Female, age 94, left hemisphere 171.3
2516 Male, age 75, right hemisphere 169.4
1883 Male, age 76, both hemispheres 161.0
2830 Female, age 67, right hemisphere 159.9
2255 Female, age 91, right hemisphere 158.9
2256 Male, age 80, left hemisphere 158.7
Stria terminalis, bed nucleus
nTPM: 159.8
1974 Female, age 91, both hemispheres 163.2
2486 Female, age 94, both hemispheres 158.9
2201 Male, age 74, unknown 157.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 162.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 162.1
Samples: 152

Max nTPM: 509.4
Min nTPM: 70.8
Std nTPM: 62.0
Median nTPM: 150.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 509.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 413.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 381.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 380.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 374.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 311.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 286.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 279.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 258.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 251.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 230.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 228.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 227.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 225.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 225.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 218.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 216.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 205.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 198.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 197.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 196.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 195.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 193.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 191.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 191.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 191.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 190.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 189.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 188.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 186.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 186.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 185.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 185.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 183.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 182.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 182.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 179.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 179.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 178.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 177.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 176.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 174.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 174.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 174.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 174.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 173.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 172.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 171.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 171.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 171.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 170.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 168.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 168.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 167.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 167.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 162.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 161.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 161.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 159.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 159.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 158.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 158.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 158.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 156.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 156.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 156.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 156.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 156.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 155.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 155.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 155.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 153.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 153.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 152.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 151.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 150.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 150.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 150.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 150.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 150.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 150.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 150.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 149.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 149.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 148.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 148.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 147.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 146.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 146.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 145.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 145.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 144.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 143.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 142.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 141.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 140.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 139.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 139.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 139.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 138.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 138.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 136.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 136.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 135.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 135.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 134.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 134.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 133.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 133.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 133.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 132.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 130.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 129.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 127.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 126.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 125.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 123.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 123.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 123.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 123.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 122.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 121.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 120.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 120.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 119.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 118.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 117.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 117.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 116.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 115.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 112.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 111.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 111.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 110.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 110.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 105.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 102.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 101.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 100.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 97.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 96.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 95.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 94.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 94.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 91.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 90.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 90.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 86.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 83.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 77.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 72.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 70.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 48.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 48.5
FF:10151-102I7 76 years, female 48.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 70.2
Pig sample Sample description nTPM
Amygdala
nTPM: 70.2
Samples: 4

Max nTPM: 92.8
Min nTPM: 56.5
Sample A Female 92.8
Sample B Female 73.1
Sample C Male 58.5
Sample D Male 56.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 97.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 97.9
Samples: 4

Max nTPM: 110.5
Min nTPM: 85.4
Sample A Male 95.2
Sample B Male 100.6
Sample C Female 110.5
Sample D Female 85.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 4.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.9
70303761 Antisense, RP_050609_02_D07, Mouse strain C57BL/6J (56 days, male) 4.9

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