BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:24.7 nTPM
HPA:24.7 nTPM
GTEx:41.4 nTPM
FANTOM5:225.5 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 24.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 18.9
2290 Female, age 72, unknown 25.0
2846 Female, age 79, unknown 23.4
2288 Male, age 75, left hemisphere 20.5
1857 Female, age 85, left hemisphere 20.3
1781 Male, age 74, unknown 18.3
2289 Male, age 61, right hemisphere 18.2
1854 Male, age 80, left hemisphere 14.3
2481 Female, age 94, left hemisphere 11.1
Claustrum
nTPM: 24.7
2645 Female, age 72, unknown 38.4
2568 Male, age 61, both hemispheres 33.8
2284 Female, age 91, both hemispheres 31.4
2292 Female, age 85, both hemispheres 27.2
2196 Female, age 79, unknown 24.7
2198 Male, age 80, both hemispheres 22.6
1956 Male, age 74, unknown 21.0
2491 Male, age 75, both hemispheres 14.2
2392 Female, age 94, both hemispheres 9.0
Globus pallidus, externus
nTPM: 22.7
2567 Female, age 72, unknown 34.9
1996 Male, age 80, right hemisphere 26.1
2646 Male, age 61, right hemisphere 22.7
2772 Female, age 79, unknown 16.6
2395 Male, age 75, both hemispheres 13.3
Globus pallidus, internus
nTPM: 18.6
1818 Male, age 74, unknown 25.9
2566 Female, age 72, unknown 24.7
2037 Male, age 80, right hemisphere 24.3
2111 Female, age 85, right hemisphere 15.6
2483 Female, age 94, right hemisphere 15.4
2287 Male, age 75, right hemisphere 12.7
2778 Female, age 91, both hemispheres 12.0
Nucleus accumbens
nTPM: 15.5
2698 Female, age 72, unknown 30.4
1806 Female, age 85, left hemisphere 18.4
1783 Male, age 74, unknown 17.3
2286 Male, age 75, left hemisphere 14.6
1856 Female, age 91, right hemisphere 13.4
2824 Male, age 61, right hemisphere 13.1
2391 Female, age 94, left hemisphere 9.2
2732 Male, age 80, right hemisphere 7.9
Nucleus basalis of Meynert
nTPM: 20.4
2569 Male, age 61, both hemispheres 31.6
2821 Male, age 75, both hemispheres 24.1
2484 Female, age 94, left hemisphere 13.6
2393 Male, age 80, right hemisphere 12.3
Nucleus of the diagonal band
nTPM: 20.1
2195 Female, age 85, both hemispheres 31.1
2029 Male, age 61, right hemisphere 22.3
2775 Male, age 80, right hemisphere 20.5
1812 Female, age 91, both hemispheres 15.4
1979 Male, age 74, unknown 11.3
Olfactory tubercle
nTPM: 20.0
2856 Male, age 75, right hemisphere 30.2
2487 Female, age 94, left hemisphere 16.8
1998 Female, age 91, both hemispheres 16.7
1846 Male, age 80, right hemisphere 16.0
Putamen
nTPM: 17.5
2647 Male, age 75, left hemisphere 34.5
2489 Female, age 72, unknown 21.0
1838 Male, age 80, right hemisphere 18.0
1829 Male, age 74, unknown 15.4
2482 Female, age 94, left hemisphere 14.0
1937 Female, age 91, right hemisphere 12.9
2466 Female, age 79, unknown 6.9
Septal nuclei
nTPM: 18.3
1960 Male, age 74, unknown 25.7
2629 Female, age 94, right hemisphere 24.3
2059 Female, age 85, both hemispheres 20.0
2394 Male, age 61, left hemisphere 19.0
2199 Male, age 80, right hemisphere 13.8
2031 Female, age 72, unknown 13.6
2009 Female, age 91, both hemispheres 11.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 41.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 35.8
Samples: 246

Max nTPM: 71.0
Min nTPM: 13.5
Std nTPM: 9.6
Median nTPM: 34.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 71.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 66.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 63.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 63.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 58.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 58.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 58.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 57.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 57.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 56.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 54.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 41.4
Samples: 246

Max nTPM: 102.2
Min nTPM: 15.2
Std nTPM: 11.5
Median nTPM: 40.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 102.2
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 78.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 75.2
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 70.5
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 70.0
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 69.8
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 68.2
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 67.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 67.1
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 62.9
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 61.6
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Brain - Putamen (basal ganglia)
Average nTPM: 39.8
Samples: 205

Max nTPM: 75.5
Min nTPM: 18.4
Std nTPM: 10.2
Median nTPM: 38.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 75.5
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 73.6
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 72.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 70.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 64.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 63.3
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 62.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 59.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 57.5
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 57.5
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 57.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 225.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 199.7
FF:10164-103B2 76 years, female 199.7
Globus pallidus
Scaled Tags Per Million: 162.1
FF:10175-103C4 60 years, female 192.6
FF:10161-103A8 76 years, female 131.7
Nucleus accumbens
Scaled Tags Per Million: 207.9
FF:10037-101F1 23-56 years, mixed 207.9
Putamen
Scaled Tags Per Million: 225.5
FF:10176-103C5 60 years, female 225.5

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The Human Protein Atlas

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