MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:23.8 nTPM
HPA:23.8 nTPM
GTEx:41.1 nTPM
FANTOM5:119.7 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.8
2666 Male, age 74, left hemisphere 38.4
2586 Male, age 75, left hemisphere 35.9
2828 Female, age 72, unknown 34.8
2219 Male, age 76, both hemispheres 23.1
1827 Male, age 72, unknown 22.6
1833 Male, age 53, unknown 19.9
1870 Female, age 42, unknown 19.4
2019 Male, age 18, unknown 16.0
1830 Male, age 51, unknown 15.2
2411 Female, age 72, unknown 12.7
Dorsal raphe nucleus
nTPM: 17.3
1828 Male, age 53, unknown 24.8
2047 Male, age 72, unknown 22.8
2750 Male, age 76, both hemispheres 16.1
2016 Female, age 72, unknown 15.2
2298 Female, age 72, unknown 7.4
Inferior colliculus
nTPM: 17.6
2849 Male, age 72, unknown 28.6
1890 Male, age 53, unknown 17.2
1848 Female, age 42, unknown 16.6
2097 Female, age 72, unknown 8.2
Median raphe nucleus
nTPM: 22.9
2220 Male, age 76, midline 22.9
Pedunculopontine tegmental nucleus
nTPM: 19.7
2334 Male, age 80, both hemispheres 25.5
2338 Male, age 61, both hemispheres 20.0
1921 Female, age 85, both hemispheres 13.6
Periaquaductal grey, anterior
nTPM: 17.2
1795 Male, age 51, unknown 23.8
1947 Male, age 18, unknown 14.7
2502 Female, age 75, unknown 13.1
Periaquaductal grey, dorsal
nTPM: 16.4
2850 Male, age 76, both hemispheres 23.6
1831 Male, age 72, unknown 17.1
2464 Female, age 72, unknown 13.9
1840 Male, age 53, unknown 11.1
Periaquaductal grey, lateral
nTPM: 13.2
2053 Male, age 18, unknown 14.6
2140 Male, age 76, both hemispheres 14.3
2272 Male, age 74, both hemispheres 10.8
Pretectal area
nTPM: 22.0
1816 Male, age 51, unknown 32.8
2007 Male, age 72, unknown 31.3
1944 Female, age 72, unknown 30.9
1817 Female, age 42, unknown 30.8
1815 Male, age 53, unknown 27.0
2825 Male, age 18, unknown 22.1
2667 Female, age 75, unknown 19.6
2407 Male, age 75, both hemispheres 16.8
2224 Female, age 72, unknown 14.5
2316 Male, age 76, right hemisphere 10.2
2273 Male, age 74, both hemispheres 6.0
Red nucleus
nTPM: 21.3
2584 Male, age 75, left hemisphere 32.2
2588 Male, age 74, left hemisphere 26.6
2823 Male, age 76, right hemisphere 22.6
2769 Male, age 72, unknown 22.5
2785 Male, age 18, unknown 22.0
2503 Female, age 72, unknown 21.0
1954 Female, age 42, unknown 20.2
2227 Male, age 72, unknown 19.0
2725 Female, age 75, unknown 18.9
1865 Male, age 51, unknown 18.3
1904 Male, age 53, unknown 16.9
1821 Female, age 72, unknown 15.9
Substantia nigra
nTPM: 22.9
2665 Male, age 74, both hemispheres 40.7
2583 Male, age 75, right hemisphere 29.8
2699 Male, age 18, unknown 28.9
1916 Female, age 42, unknown 28.7
1851 Male, age 51, unknown 21.9
1889 Female, age 72, unknown 21.9
1941 Male, age 53, unknown 21.9
2590 Female, age 75, unknown 20.7
2409 Female, age 72, unknown 8.7
2241 Male, age 72, unknown 6.0
Superior colliculus
nTPM: 20.2
2668 Female, age 75, unknown 29.8
2664 Male, age 75, both hemispheres 28.0
1796 Male, age 53, unknown 22.7
2087 Female, age 72, unknown 21.8
2261 Male, age 18, unknown 19.4
2587 Male, age 74, left hemisphere 18.9
1839 Male, age 51, unknown 17.3
1913 Female, age 42, unknown 17.3
1895 Male, age 76, right hemisphere 13.6
1995 Male, age 72, unknown 13.6
Ventral tegmental area
nTPM: 19.1
1915 Female, age 42, unknown 24.8
2218 Male, age 76, both hemispheres 21.2
2223 Female, age 72, unknown 19.6
2410 Female, age 72, unknown 17.9
2021 Male, age 53, unknown 15.7
1942 Male, age 51, unknown 15.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 41.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.1
Samples: 139

Max nTPM: 83.5
Min nTPM: 16.1
Std nTPM: 11.1
Median nTPM: 40.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 83.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 69.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 66.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 65.9
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 65.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 64.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 61.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 61.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 60.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 58.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 57.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 119.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 119.7
FF:10158-103A5 76 years, female 119.7

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The Human Protein Atlas

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