BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:73.9 nTPM
HPA:73.9 nTPM
GTEx:64.7 nTPM
FANTOM5:40.7 Scaled Tags Per Million
Pig:18.4 nTPM
Mouse:50.0 nTPM
Allen mouse:0.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA027468Antibody HPA028668
Glial cells Not detectedNot detected
Neuronal cells MediumNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 73.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 73.9
1857 Female, age 85, left hemisphere 76.8
2481 Female, age 94, left hemisphere 76.6
2846 Female, age 79, unknown 75.9
1854 Male, age 80, left hemisphere 74.2
2290 Female, age 72, unknown 73.9
2288 Male, age 75, left hemisphere 72.3
1781 Male, age 74, unknown 71.7
2289 Male, age 61, right hemisphere 70.2
Claustrum
nTPM: 70.2
2198 Male, age 80, both hemispheres 74.9
1956 Male, age 74, unknown 72.0
2491 Male, age 75, both hemispheres 70.9
2568 Male, age 61, both hemispheres 70.8
2392 Female, age 94, both hemispheres 69.4
2645 Female, age 72, unknown 69.2
2196 Female, age 79, unknown 68.9
2284 Female, age 91, both hemispheres 68.5
2292 Female, age 85, both hemispheres 67.3
Globus pallidus, externus
nTPM: 71.3
2395 Male, age 75, both hemispheres 74.9
1996 Male, age 80, right hemisphere 73.6
2772 Female, age 79, unknown 72.3
2646 Male, age 61, right hemisphere 69.0
2567 Female, age 72, unknown 66.6
Globus pallidus, internus
nTPM: 71.5
2483 Female, age 94, right hemisphere 77.7
2287 Male, age 75, right hemisphere 74.6
2778 Female, age 91, both hemispheres 72.0
2037 Male, age 80, right hemisphere 70.4
1818 Male, age 74, unknown 70.1
2111 Female, age 85, right hemisphere 68.0
2566 Female, age 72, unknown 67.8
Nucleus accumbens
nTPM: 73.1
1856 Female, age 91, right hemisphere 78.2
2286 Male, age 75, left hemisphere 74.7
1806 Female, age 85, left hemisphere 74.4
1783 Male, age 74, unknown 73.6
2698 Female, age 72, unknown 73.0
2824 Male, age 61, right hemisphere 72.8
2391 Female, age 94, left hemisphere 71.2
2732 Male, age 80, right hemisphere 66.6
Nucleus basalis of Meynert
nTPM: 71.3
2393 Male, age 80, right hemisphere 72.0
2569 Male, age 61, both hemispheres 71.6
2821 Male, age 75, both hemispheres 71.5
2484 Female, age 94, left hemisphere 69.9
Nucleus of the diagonal band
nTPM: 73.5
2775 Male, age 80, right hemisphere 78.5
1812 Female, age 91, both hemispheres 75.4
2029 Male, age 61, right hemisphere 73.7
2195 Female, age 85, both hemispheres 71.7
1979 Male, age 74, unknown 68.1
Olfactory tubercle
nTPM: 71.6
1846 Male, age 80, right hemisphere 74.1
1998 Female, age 91, both hemispheres 73.6
2856 Male, age 75, right hemisphere 70.3
2487 Female, age 94, left hemisphere 68.3
Putamen
nTPM: 72.7
2482 Female, age 94, left hemisphere 76.4
1937 Female, age 91, right hemisphere 74.7
2466 Female, age 79, unknown 74.4
1838 Male, age 80, right hemisphere 72.9
2647 Male, age 75, left hemisphere 71.4
2489 Female, age 72, unknown 69.8
1829 Male, age 74, unknown 69.5
Septal nuclei
nTPM: 71.0
1960 Male, age 74, unknown 75.4
2031 Female, age 72, unknown 73.7
2009 Female, age 91, both hemispheres 72.7
2629 Female, age 94, right hemisphere 69.5
2059 Female, age 85, both hemispheres 69.4
2394 Male, age 61, left hemisphere 68.5
2199 Male, age 80, right hemisphere 68.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 64.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 60.9
Samples: 246

Max nTPM: 128.5
Min nTPM: 33.2
Std nTPM: 13.6
Median nTPM: 58.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 128.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 108.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 102.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 100.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 99.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 97.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 96.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 94.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 94.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 91.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 89.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 63.1
Samples: 246

Max nTPM: 134.4
Min nTPM: 33.6
Std nTPM: 14.2
Median nTPM: 61.4
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 134.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 109.4
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 103.1
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 102.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 101.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 99.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 96.1
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 94.7
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 94.1
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 92.1
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 91.8
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Brain - Putamen (basal ganglia)
Average nTPM: 64.7
Samples: 205

Max nTPM: 106.6
Min nTPM: 39.3
Std nTPM: 12.5
Median nTPM: 62.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 106.6
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 96.5
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 96.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 95.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 93.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 90.9
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 90.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 89.7
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 88.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 88.0
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 86.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 37.9
FF:10164-103B2 76 years, female 37.9
Globus pallidus
Scaled Tags Per Million: 27.8
FF:10175-103C4 60 years, female 33.1
FF:10161-103A8 76 years, female 22.5
Nucleus accumbens
Scaled Tags Per Million: 40.7
FF:10037-101F1 23-56 years, mixed 40.7
Putamen
Scaled Tags Per Million: 32.2
FF:10176-103C5 60 years, female 32.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 18.4
Pig sample Sample description nTPM
Caudate
nTPM: 17.8
Samples: 4

Max nTPM: 20.5
Min nTPM: 14.8
Sample A Female 14.8
Sample B Female 20.5
Sample C Male 20.3
Sample D Male 15.7
Putamen
nTPM: 18.4
Samples: 4

Max nTPM: 21.8
Min nTPM: 16.0
Sample A Female 19.9
Sample B Female 16.0
Sample C Male 21.8
Sample D Male 16.0
Septum
nTPM: 18.0
Samples: 4

Max nTPM: 19.6
Min nTPM: 14.7
Sample A Female 19.6
Sample B Female 18.3
Sample C Male 19.2
Sample D Male 14.7
Ventral pallidum
nTPM: 17.7
Samples: 4

Max nTPM: 18.9
Min nTPM: 16.6
Sample A Female 16.7
Sample B Female 18.9
Sample C Male 18.4
Sample D Male 16.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 50.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 49.9
Samples: 4

Max nTPM: 51.7
Min nTPM: 48.1
Sample A Male 48.1
Sample B Male 49.7
Sample C Female 49.9
Sample D Female 51.7
Septum
nTPM: 42.5
Samples: 4

Max nTPM: 46.6
Min nTPM: 40.0
Sample A Male 40.9
Sample B Male 42.6
Sample C Female 46.6
Sample D Female 40.0
Ventral forebrain
nTPM: 50.0
Samples: 4

Max nTPM: 55.6
Min nTPM: 43.7
Sample A Male 43.7
Sample B Male 49.6
Sample C Female 55.6
Sample D Female 51.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
74581008 Antisense, RP_060215_02_D02, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 0.9
74581008 Antisense, RP_060215_02_D02, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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