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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:363.0 nTPM
HPA:363.0 nTPM
GTEx:367.5 nTPM
FANTOM5:135.0 Scaled Tags Per Million
Pig:28.5 nTPM
Mouse:200.4 nTPM
Allen mouse:18.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 363.0
Sample id Sample description nTPM
Amygdala
nTPM: 357.2
2695 Female, age 67, right hemisphere 371.7
2814 Male, age 76, right hemisphere 362.2
2517 Female, age 94, left hemisphere 352.7
2514 Male, age 75, right hemisphere 352.5
1987 Female, age 91, left hemisphere 346.9
Basal amygdala
nTPM: 361.3
2685 Female, age 94, left hemisphere 379.9
2243 Female, age 91, right hemisphere 376.1
2110 Male, age 80, left hemisphere 359.7
2609 Male, age 75, right hemisphere 358.8
1955 Male, age 76, both hemispheres 350.5
2827 Female, age 67, right hemisphere 342.8
Central amygdala
nTPM: 363.0
2826 Female, age 94, left hemisphere 377.8
2701 Female, age 91, right hemisphere 370.4
2239 Male, age 80, left hemisphere 366.8
2515 Male, age 75, right hemisphere 355.2
1905 Male, age 76, both hemispheres 344.7
Corticomedial amygdala
nTPM: 359.9
2242 Female, age 91, right hemisphere 372.7
2829 Male, age 80, left hemisphere 365.0
2240 Male, age 76, both hemispheres 363.4
2429 Female, age 94, left hemisphere 360.2
2535 Female, age 67, right hemisphere 352.0
2428 Male, age 75, right hemisphere 345.9
Lateral amygdala
nTPM: 357.3
2534 Female, age 94, left hemisphere 390.2
1883 Male, age 76, both hemispheres 360.8
2256 Male, age 80, left hemisphere 355.3
2255 Female, age 91, right hemisphere 349.5
2516 Male, age 75, right hemisphere 347.2
2830 Female, age 67, right hemisphere 340.6
Stria terminalis, bed nucleus
nTPM: 358.8
1974 Female, age 91, both hemispheres 371.1
2486 Female, age 94, both hemispheres 358.5
2201 Male, age 74, unknown 346.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 367.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 367.5
Samples: 152

Max nTPM: 782.1
Min nTPM: 195.1
Std nTPM: 88.5
Median nTPM: 350.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 782.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 665.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 599.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 587.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 580.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 574.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 565.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 547.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 530.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 527.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 525.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 525.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 512.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 505.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 498.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 495.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 483.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 483.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 482.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 465.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 457.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 448.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 445.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 441.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 437.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 429.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 423.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 420.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 418.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 417.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 411.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 410.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 407.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 402.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 401.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 398.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 398.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 397.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 396.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 395.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 395.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 395.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 394.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 391.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 388.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 387.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 385.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 384.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 384.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 384.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 381.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 378.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 378.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 378.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 377.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 375.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 374.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 374.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 373.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 371.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 369.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 368.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 366.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 366.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 364.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 363.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 362.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 362.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 361.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 361.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 358.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 358.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 357.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 354.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 351.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 350.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 350.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 349.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 346.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 346.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 345.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 345.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 343.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 341.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 338.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 337.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 335.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 335.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 335.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 334.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 334.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 334.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 334.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 331.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 331.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 328.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 328.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 326.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 324.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 323.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 322.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 321.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 320.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 320.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 319.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 319.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 318.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 317.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 316.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 314.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 314.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 312.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 311.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 308.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 307.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 306.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 304.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 303.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 302.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 302.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 301.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 300.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 298.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 298.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 295.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 295.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 293.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 293.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 293.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 292.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 289.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 289.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 286.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 282.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 280.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 276.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 275.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 274.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 274.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 273.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 273.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 271.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 268.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 267.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 262.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 262.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 260.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 259.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 232.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 232.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 232.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 195.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 135.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 135.0
FF:10151-102I7 76 years, female 135.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 28.5
Pig sample Sample description nTPM
Amygdala
nTPM: 28.5
Samples: 4

Max nTPM: 40.3
Min nTPM: 22.5
Sample A Female 40.3
Sample B Female 22.5
Sample C Male 24.3
Sample D Male 27.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 200.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 200.5
Samples: 4

Max nTPM: 227.6
Min nTPM: 172.9
Sample A Male 227.6
Sample B Male 172.9
Sample C Female 207.2
Sample D Female 194.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 18.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 18.8
75934915 Antisense, RP_060530_01_E07, Mouse strain C57BL/6J (56 days, male) 20.8
68633113 Antisense, RP_050125_02_D09, Mouse strain C57BL/6J (56 days, male) 16.8

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