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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:356.5 nTPM
HPA:356.5 nTPM
GTEx:320.3 nTPM
FANTOM5:129.9 Scaled Tags Per Million
Pig:64.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 356.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 347.3
2565 Male, age 75, midline 360.1
2816 Male, age 47, midline 350.8
2194 Female, age 79, both hemispheres 349.8
1981 Female, age 72, midline 341.1
2048 Male, age 55, midline 334.7
Cervical spinal cord, dorsal horn
nTPM: 351.2
2721 Male, age 90, both hemispheres 366.4
2296 Male, age 66, both hemispheres 352.8
2069 Male, age 47, both hemispheres 349.0
1877 Male, age 55, unknown 348.4
2173 Female, age 72, unknown 347.6
2297 Male, age 75, both hemispheres 343.2
Cervical spinal cord, ventral horn
nTPM: 356.5
2820 Female, age 79, both hemispheres 375.5
2480 Male, age 75, both hemispheres 363.0
2068 Male, age 55, unknown 357.5
2295 Male, age 66, both hemispheres 352.4
2098 Female, age 72, unknown 346.0
2809 Male, age 90, both hemispheres 344.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 320.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 320.3
Samples: 159

Max nTPM: 482.6
Min nTPM: 201.5
Std nTPM: 60.5
Median nTPM: 314.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 482.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 475.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 474.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 470.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 464.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 463.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 454.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 443.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 422.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 417.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 415.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 415.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 409.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 406.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 405.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 404.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 402.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 397.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 394.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 393.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 393.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 392.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 390.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 390.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 388.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 387.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 385.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 379.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 373.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 370.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 369.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 367.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 366.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 365.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 361.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 359.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 359.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 359.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 353.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 351.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 350.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 350.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 349.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 348.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 347.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 344.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 344.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 343.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 342.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 342.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 341.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 341.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 340.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 337.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 335.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 335.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 334.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 333.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 332.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 329.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 328.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 328.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 327.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 327.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 326.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 325.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 325.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 324.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 323.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 323.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 322.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 322.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 321.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 321.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 319.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 319.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 319.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 318.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 318.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 314.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 313.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 313.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 312.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 312.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 311.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 310.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 309.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 309.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 309.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 308.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 308.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 307.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 307.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 305.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 304.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 304.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 304.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 304.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 303.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 301.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 300.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 300.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 299.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 299.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 296.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 294.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 292.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 291.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 290.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 289.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 286.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 286.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 284.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 283.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 282.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 280.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 276.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 275.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 274.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 274.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 274.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 273.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 270.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 270.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 269.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 269.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 269.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 269.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 267.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 265.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 265.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 265.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 264.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 264.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 260.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 257.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 255.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 255.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 254.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 252.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 250.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 249.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 249.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 246.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 244.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 243.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 242.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 237.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 231.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 225.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 224.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 224.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 223.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 223.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 217.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 209.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 206.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 205.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 201.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 129.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 129.9
FF:10181-103D1 60 years, female 130.8
FF:10159-103A6 76 years, female 129.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 64.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 55.6
Samples: 4

Max nTPM: 70.8
Min nTPM: 48.6
Sample A Female 48.6
Sample B Female 49.0
Sample C Male 70.8
Sample D Male 53.9
Ventral spinal cord
nTPM: 64.5
Samples: 4

Max nTPM: 72.4
Min nTPM: 59.6
Sample A Female 59.6
Sample B Female 63.4
Sample C Male 72.4
Sample D Male 62.5

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