BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:5.3 nTPM
HPA:5.3 nTPM
GTEx:6.9 nTPM
FANTOM5:14.5 Scaled Tags Per Million
Pig:4.1 nTPM
Mouse:17.8 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA052181
Glial cells Low
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.7
2481 Female, age 94, left hemisphere 5.5
1781 Male, age 74, unknown 4.9
1857 Female, age 85, left hemisphere 4.9
2288 Male, age 75, left hemisphere 4.7
2290 Female, age 72, unknown 4.5
2846 Female, age 79, unknown 4.5
1854 Male, age 80, left hemisphere 4.4
2289 Male, age 61, right hemisphere 4.3
Claustrum
nTPM: 4.6
2198 Male, age 80, both hemispheres 5.4
2491 Male, age 75, both hemispheres 4.9
2196 Female, age 79, unknown 4.7
2292 Female, age 85, both hemispheres 4.6
2645 Female, age 72, unknown 4.6
2284 Female, age 91, both hemispheres 4.3
2392 Female, age 94, both hemispheres 4.3
2568 Male, age 61, both hemispheres 4.3
1956 Male, age 74, unknown 4.2
Globus pallidus, externus
nTPM: 4.6
1996 Male, age 80, right hemisphere 4.8
2395 Male, age 75, both hemispheres 4.7
2772 Female, age 79, unknown 4.7
2646 Male, age 61, right hemisphere 4.6
2567 Female, age 72, unknown 4.2
Globus pallidus, internus
nTPM: 4.7
2287 Male, age 75, right hemisphere 5.2
2778 Female, age 91, both hemispheres 5.1
2566 Female, age 72, unknown 4.8
2483 Female, age 94, right hemisphere 4.7
2111 Female, age 85, right hemisphere 4.6
1818 Male, age 74, unknown 4.4
2037 Male, age 80, right hemisphere 3.7
Nucleus accumbens
nTPM: 4.6
2286 Male, age 75, left hemisphere 5.0
1806 Female, age 85, left hemisphere 4.8
2391 Female, age 94, left hemisphere 4.8
1783 Male, age 74, unknown 4.7
1856 Female, age 91, right hemisphere 4.6
2824 Male, age 61, right hemisphere 4.5
2698 Female, age 72, unknown 4.4
2732 Male, age 80, right hemisphere 4.4
Nucleus basalis of Meynert
nTPM: 4.5
2821 Male, age 75, both hemispheres 4.6
2393 Male, age 80, right hemisphere 4.5
2569 Male, age 61, both hemispheres 4.4
2484 Female, age 94, left hemisphere 4.3
Nucleus of the diagonal band
nTPM: 5.3
2775 Male, age 80, right hemisphere 6.2
1812 Female, age 91, both hemispheres 5.5
2029 Male, age 61, right hemisphere 5.2
2195 Female, age 85, both hemispheres 5.0
1979 Male, age 74, unknown 4.7
Olfactory tubercle
nTPM: 4.8
1998 Female, age 91, both hemispheres 4.9
2487 Female, age 94, left hemisphere 4.9
1846 Male, age 80, right hemisphere 4.7
2856 Male, age 75, right hemisphere 4.6
Putamen
nTPM: 4.3
2466 Female, age 79, unknown 4.8
1937 Female, age 91, right hemisphere 4.7
1829 Male, age 74, unknown 4.6
2482 Female, age 94, left hemisphere 4.5
2489 Female, age 72, unknown 4.4
1838 Male, age 80, right hemisphere 3.8
2647 Male, age 75, left hemisphere 3.7
Septal nuclei
nTPM: 4.8
2031 Female, age 72, unknown 5.3
2394 Male, age 61, left hemisphere 5.2
1960 Male, age 74, unknown 5.0
2009 Female, age 91, both hemispheres 4.8
2629 Female, age 94, right hemisphere 4.6
2199 Male, age 80, right hemisphere 4.5
2059 Female, age 85, both hemispheres 4.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 6.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.1
Samples: 246

Max nTPM: 11.3
Min nTPM: 2.0
Std nTPM: 1.6
Median nTPM: 6.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 11.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 11.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 10.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 10.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 10.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 10.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 9.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 9.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 9.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 9.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 9.1
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.9
Samples: 246

Max nTPM: 11.6
Min nTPM: 2.5
Std nTPM: 1.7
Median nTPM: 6.9
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 11.6
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 11.3
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 11.0
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 10.9
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 10.8
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 10.3
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 10.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 10.1
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 9.9
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 9.8
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 9.7
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 6.1
Samples: 205

Max nTPM: 10.5
Min nTPM: 1.9
Std nTPM: 1.6
Median nTPM: 6.2
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 10.5
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 10.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 9.6
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 9.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 9.3
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 9.2
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 9.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 9.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 9.0
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 8.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 8.9
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 9.4
FF:10164-103B2 76 years, female 9.4
Globus pallidus
Scaled Tags Per Million: 11.7
FF:10175-103C4 60 years, female 12.6
FF:10161-103A8 76 years, female 10.8
Nucleus accumbens
Scaled Tags Per Million: 14.5
FF:10037-101F1 23-56 years, mixed 14.5
Putamen
Scaled Tags Per Million: 11.3
FF:10176-103C5 60 years, female 11.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 4.1
Pig sample Sample description nTPM
Caudate
nTPM: 4.1
Samples: 4

Max nTPM: 4.7
Min nTPM: 3.4
Sample A Female 3.7
Sample B Female 3.4
Sample C Male 4.7
Sample D Male 4.7
Putamen
nTPM: 4.1
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.8
Sample A Female 3.8
Sample B Female 3.9
Sample C Male 4.5
Sample D Male 4.0
Septum
nTPM: 3.7
Samples: 4

Max nTPM: 4.4
Min nTPM: 3.1
Sample A Female 3.3
Sample B Female 3.9
Sample C Male 3.1
Sample D Male 4.4
Ventral pallidum
nTPM: 3.5
Samples: 4

Max nTPM: 3.9
Min nTPM: 3.2
Sample A Female 3.2
Sample B Female 3.9
Sample C Male 3.3
Sample D Male 3.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 17.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 16.0
Samples: 4

Max nTPM: 17.2
Min nTPM: 15.0
Sample A Male 16.5
Sample B Male 15.1
Sample C Female 15.0
Sample D Female 17.2
Septum
nTPM: 17.8
Samples: 4

Max nTPM: 20.1
Min nTPM: 15.2
Sample A Male 15.2
Sample B Male 20.1
Sample C Female 18.9
Sample D Female 16.9
Ventral forebrain
nTPM: 16.2
Samples: 4

Max nTPM: 17.1
Min nTPM: 15.3
Sample A Male 16.9
Sample B Male 17.1
Sample C Female 15.3
Sample D Female 15.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
69444753 Antisense, RP_050414_04_E08, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
69444753 Antisense, RP_050414_04_E08, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.