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UBA2
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:36.5 nTPM
HPA:36.5 nTPM
FANTOM5:103.9 Scaled Tags Per Million
Allen mouse:3.6 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 36.5
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 34.4
2188 Female, age 91, both hemispheres 36.3
1984 Male, age 76, both hemispheres 35.0
2090 Male, age 80, both hemispheres 34.7
2301 Female, age 85, both hemispheres 31.5
Dorsal cochlear nucleus
nTPM: 34.7
2802 Male, age 74, right hemisphere 37.3
2187 Female, age 91, both hemispheres 36.0
2378 Male, age 80, both hemispheres 33.9
2370 Male, age 61, both hemispheres 33.4
2058 Male, age 76, both hemispheres 32.8
Dorsal tegmental nucleus
nTPM: 34.4
2083 Male, age 80, both hemispheres 35.6
2326 Male, age 74, both hemispheres 35.1
1936 Male, age 76, left hemisphere 34.1
2358 Male, age 61, both hemispheres 33.0
Dorsolateral tegmental area
nTPM: 35.5
2751 Female, age 85, both hemispheres 38.2
2654 Male, age 80, both hemispheres 36.4
2141 Male, age 76, both hemispheres 36.2
2337 Male, age 61, both hemispheres 33.9
2360 Male, age 74, both hemispheres 32.9
Kolliker-Fuse nucleus
nTPM: 35.9
2793 Female, age 91, left hemisphere 37.4
2315 Male, age 76, right hemisphere 35.9
2163 Male, age 80, both hemispheres 34.3
Lateral lemniscal nuclei
nTPM: 34.9
2036 Male, age 80, both hemispheres 35.7
2453 Male, age 74, right hemisphere 35.5
2320 Female, age 91, left hemisphere 34.8
2746 Female, age 85, left hemisphere 34.6
2169 Male, age 76, both hemispheres 34.1
Lateral parabrachial nucleus
nTPM: 35.2
2792 Male, age 76, both hemispheres 35.8
2013 Male, age 80, both hemispheres 35.4
2139 Female, age 85, right hemisphere 35.2
2790 Male, age 61, both hemispheres 34.4
Lateral vestibular nucleus
nTPM: 33.0
2311 Male, age 80, both hemispheres 33.2
2184 Male, age 76, both hemispheres 32.8
Locus coeruleus
nTPM: 35.8
2788 Male, age 74, unknown 37.4
2014 Male, age 55, unknown 36.7
2720 Male, age 74, both hemispheres 36.4
2123 Female, age 91, both hemispheres 35.9
1980 Male, age 76, both hemispheres 35.4
2162 Male, age 80, both hemispheres 35.2
2317 Female, age 72, unknown 34.0
Medial olivary nucleus
nTPM: 36.5
1943 Male, age 61, both hemispheres 38.3
1962 Male, age 76, both hemispheres 37.7
2138 Female, age 91, both hemispheres 35.9
2851 Male, age 80, both hemispheres 34.0
Medial parabrachial nucleus
nTPM: 34.8
2463 Female, age 85, right hemisphere 36.5
2170 Female, age 91, both hemispheres 36.0
2854 Male, age 80, both hemispheres 35.1
2786 Male, age 76, both hemispheres 33.9
2156 Male, age 61, both hemispheres 32.6
Medial periolivary nuclei
nTPM: 34.9
2791 Male, age 74, right hemisphere 36.1
2458 Female, age 91, both hemispheres 35.1
2063 Male, age 76, both hemispheres 34.9
2081 Male, age 80, both hemispheres 34.3
2171 Female, age 85, both hemispheres 34.3
Motor facial nucleus
nTPM: 34.6
2697 Female, age 85, both hemispheres 35.5
2365 Male, age 74, right hemisphere 35.0
2062 Male, age 76, both hemispheres 34.6
2795 Female, age 91, both hemispheres 34.5
2126 Male, age 61, both hemispheres 34.1
2327 Male, age 80, both hemispheres 33.9
Motor trigeminal nucleus
nTPM: 33.9
2560 Male, age 74, both hemispheres 35.2
2321 Female, age 91, both hemispheres 34.3
2309 Male, age 76, both hemispheres 33.6
2079 Male, age 80, both hemispheres 33.4
2335 Male, age 61, both hemispheres 33.1
Nuclei of the trapezoid body
nTPM: 34.2
1983 Male, age 76, both hemispheres 35.6
2735 Female, age 85, both hemispheres 35.3
2159 Male, age 61, both hemispheres 33.8
2368 Female, age 91, both hemispheres 33.2
2166 Male, age 80, both hemispheres 33.1
Paramedian reticular nucleus
nTPM: 35.2
2050 Female, age 85, both hemispheres 35.7
2313 Male, age 61, both hemispheres 35.4
2057 Male, age 80, both hemispheres 35.0
2052 Male, age 76, both hemispheres 34.7
Pontine nuclei
nTPM: 36.0
2787 Female, age 85, both hemispheres 37.3
1863 Male, age 55, unknown 37.0
2727 Male, age 61, right hemisphere 36.3
2319 Female, age 91, both hemispheres 36.2
2109 Female, age 72, unknown 36.0
2454 Male, age 74, left hemisphere 35.8
1968 Male, age 76, left hemisphere 34.5
2115 Male, age 80, left hemisphere 34.5
Pontine raphe nucleus
nTPM: 36.3
2122 Female, age 85, midline 36.4
2853 Male, age 76, midline 36.2
Posteroventral cochlear nucleus
nTPM: 35.8
2135 Female, age 91, both hemispheres 38.0
2341 Male, age 80, both hemispheres 36.5
2070 Male, age 76, both hemispheres 36.0
2752 Female, age 85, both hemispheres 34.9
2371 Male, age 61, both hemispheres 33.6
Principal sensory trigeminal nucleus
nTPM: 33.6
2008 Male, age 80, left hemisphere 35.1
2367 Female, age 91, left hemisphere 34.7
2324 Male, age 76, both hemispheres 32.4
2158 Male, age 61, both hemispheres 32.1
Reticular pontine nucleus, caudal
nTPM: 35.2
2559 Male, age 74, both hemispheres 37.2
2092 Male, age 76, both hemispheres 36.2
2457 Female, age 91, both hemispheres 35.2
2332 Male, age 80, right hemisphere 32.3
Reticular pontine nucleus, oral
nTPM: 35.6
2366 Female, age 91, both hemispheres 38.1
1939 Male, age 80, both hemispheres 38.0
2167 Male, age 76, both hemispheres 35.6
2012 Female, age 85, both hemispheres 35.5
2361 Male, age 74, both hemispheres 30.6
Reticulotegmental nucleus
nTPM: 35.5
2452 Male, age 74, both hemispheres 37.3
2322 Female, age 91, both hemispheres 35.8
2325 Male, age 76, both hemispheres 35.1
2333 Male, age 80, both hemispheres 33.7
Spinal trigeminal nucleus, oral
nTPM: 34.2
2737 Female, age 85, both hemispheres 34.6
1978 Male, age 76, both hemispheres 33.9
2164 Male, age 80, both hemispheres 33.9
Subcoeruleus area
nTPM: 36.1
2369 Female, age 85, left hemisphere 38.6
2451 Male, age 74, both hemispheres 36.3
2323 Female, age 91, left hemisphere 36.2
1958 Male, age 80, both hemispheres 35.6
2089 Male, age 76, left hemisphere 33.6
Superior olive
nTPM: 35.1
1875 Female, age 85, both hemispheres 37.5
2020 Male, age 76, both hemispheres 35.2
2364 Male, age 74, right hemisphere 34.6
2329 Male, age 80, right hemisphere 34.5
2561 Female, age 91, both hemispheres 33.7
Superior vestibular nucleus
nTPM: 34.3
2383 Male, age 74, both hemispheres 34.8
2015 Male, age 80, both hemispheres 34.2
2061 Male, age 76, both hemispheres 33.9
Ventral periolivary nuclei
nTPM: 34.2
2023 Male, age 76, both hemispheres 35.1
2165 Male, age 80, both hemispheres 34.4
2794 Female, age 91, left hemisphere 34.1
2130 Female, age 85, both hemispheres 33.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 34.5
2840 Female, age 85, both hemispheres 35.6
1959 Male, age 76, both hemispheres 35.4
2449 Male, age 74, both hemispheres 34.9
2456 Female, age 91, both hemispheres 34.0
2161 Male, age 80, both hemispheres 33.7
2359 Male, age 61, both hemispheres 33.3

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 103.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 95.3
FF:10182-103D2 60 years, female 112.1
FF:10165-103B3 76 years, female 78.5
Pons
Scaled Tags Per Million: 103.9
FF:10033-101E6 18-54 years, mixed 103.9

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 3.6
69817061 Antisense, RP_050510_02_E08, Mouse strain C57BL/6J (56 days, male) 3.6

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