MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:373.3 nTPM
HPA:373.3 nTPM
GTEx:401.2 nTPM
FANTOM5:118.1 Scaled Tags Per Million
Pig:114.8 nTPM
Mouse:266.0 nTPM
Allen mouse:7.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 373.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 340.7
1827 Male, age 72, unknown 362.9
2666 Male, age 74, left hemisphere 346.6
2219 Male, age 76, both hemispheres 344.5
2019 Male, age 18, unknown 342.5
1870 Female, age 42, unknown 338.1
2828 Female, age 72, unknown 337.5
2411 Female, age 72, unknown 336.5
2586 Male, age 75, left hemisphere 336.4
1833 Male, age 53, unknown 336.3
1830 Male, age 51, unknown 325.5
Dorsal raphe nucleus
nTPM: 360.8
2298 Female, age 72, unknown 391.5
1828 Male, age 53, unknown 365.2
2047 Male, age 72, unknown 364.0
2016 Female, age 72, unknown 349.5
2750 Male, age 76, both hemispheres 334.0
Inferior colliculus
nTPM: 351.4
2097 Female, age 72, unknown 354.3
2849 Male, age 72, unknown 353.2
1890 Male, age 53, unknown 351.6
1848 Female, age 42, unknown 346.7
Median raphe nucleus
nTPM: 360.0
2220 Male, age 76, midline 360.0
Pedunculopontine tegmental nucleus
nTPM: 357.9
2334 Male, age 80, both hemispheres 370.2
2338 Male, age 61, both hemispheres 353.8
1921 Female, age 85, both hemispheres 349.7
Periaquaductal grey, anterior
nTPM: 360.5
1947 Male, age 18, unknown 374.0
1795 Male, age 51, unknown 369.6
2502 Female, age 75, unknown 337.8
Periaquaductal grey, dorsal
nTPM: 351.3
2850 Male, age 76, both hemispheres 388.0
1840 Male, age 53, unknown 348.3
1831 Male, age 72, unknown 336.6
2464 Female, age 72, unknown 332.4
Periaquaductal grey, lateral
nTPM: 373.3
2272 Male, age 74, both hemispheres 424.4
2140 Male, age 76, both hemispheres 351.8
2053 Male, age 18, unknown 343.6
Pretectal area
nTPM: 364.2
2273 Male, age 74, both hemispheres 398.0
2007 Male, age 72, unknown 384.0
1816 Male, age 51, unknown 382.8
1817 Female, age 42, unknown 381.4
1944 Female, age 72, unknown 370.7
2667 Female, age 75, unknown 369.4
2224 Female, age 72, unknown 357.3
1815 Male, age 53, unknown 357.0
2825 Male, age 18, unknown 354.6
2407 Male, age 75, both hemispheres 325.6
2316 Male, age 76, right hemisphere 325.4
Red nucleus
nTPM: 344.3
2725 Female, age 75, unknown 370.1
1821 Female, age 72, unknown 369.5
2503 Female, age 72, unknown 352.8
2785 Male, age 18, unknown 346.6
1954 Female, age 42, unknown 346.3
2769 Male, age 72, unknown 345.5
1865 Male, age 51, unknown 342.1
2227 Male, age 72, unknown 341.2
2823 Male, age 76, right hemisphere 336.0
1904 Male, age 53, unknown 330.2
2588 Male, age 74, left hemisphere 330.2
2584 Male, age 75, left hemisphere 320.6
Substantia nigra
nTPM: 349.6
1916 Female, age 42, unknown 389.0
1941 Male, age 53, unknown 372.1
1889 Female, age 72, unknown 367.2
1851 Male, age 51, unknown 353.8
2699 Male, age 18, unknown 351.5
2665 Male, age 74, both hemispheres 348.1
2409 Female, age 72, unknown 334.4
2590 Female, age 75, unknown 330.4
2241 Male, age 72, unknown 329.4
2583 Male, age 75, right hemisphere 320.0
Superior colliculus
nTPM: 344.2
2587 Male, age 74, left hemisphere 356.8
1796 Male, age 53, unknown 354.8
2668 Female, age 75, unknown 352.6
1895 Male, age 76, right hemisphere 350.9
2261 Male, age 18, unknown 350.9
2087 Female, age 72, unknown 348.7
1839 Male, age 51, unknown 336.7
1995 Male, age 72, unknown 332.5
2664 Male, age 75, both hemispheres 329.5
1913 Female, age 42, unknown 328.8
Ventral tegmental area
nTPM: 345.3
1915 Female, age 42, unknown 365.1
2218 Male, age 76, both hemispheres 355.0
2410 Female, age 72, unknown 344.7
1942 Male, age 51, unknown 339.2
2223 Female, age 72, unknown 335.7
2021 Male, age 53, unknown 331.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 401.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 401.2
Samples: 139

Max nTPM: 971.9
Min nTPM: 170.7
Std nTPM: 128.7
Median nTPM: 367.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 971.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 832.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 716.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 696.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 696.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 690.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 653.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 627.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 620.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 615.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 610.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 118.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 118.1
FF:10158-103A5 76 years, female 118.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 114.8
Pig sample Sample description nTPM
Midbrain
nTPM: 100.1
Samples: 4

Max nTPM: 125.4
Min nTPM: 74.9
Sample A Female 121.6
Sample B Female 78.4
Sample C Male 125.4
Sample D Male 74.9
Periaqueductal gray
nTPM: 64.9
Samples: 3

Max nTPM: 71.5
Min nTPM: 54.8
Sample B Female 71.5
Sample C Male 68.4
Sample D Male 54.8
Substantia nigra
nTPM: 76.3
Samples: 4

Max nTPM: 122.2
Min nTPM: 55.9
Sample A Female 122.2
Sample B Female 56.4
Sample C Male 70.7
Sample D Male 55.9
Superior colliculi
nTPM: 114.8
Samples: 4

Max nTPM: 155.2
Min nTPM: 76.8
Sample A Female 155.2
Sample B Female 76.8
Sample C Male 140.1
Sample D Male 87.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 266.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 266.0
Samples: 4

Max nTPM: 285.6
Min nTPM: 243.6
Sample A Male 285.6
Sample B Male 255.5
Sample C Female 243.6
Sample D Female 279.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.7
76115740 Antisense, RP_060620_02_C08, Mouse strain C57BL/6J (56 days, male) 7.7
69817270 Antisense, RP_050510_03_A05, Mouse strain C57BL/6J (56 days, male) 7.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.