MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:142.3 nTPM
HPA:142.3 nTPM
GTEx:160.5 nTPM
FANTOM5:275.4 Scaled Tags Per Million
Pig:96.1 nTPM
Mouse:83.7 nTPM
Allen mouse:5.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 142.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 134.8
2411 Female, age 72, unknown 148.5
1870 Female, age 42, unknown 147.0
1833 Male, age 53, unknown 139.2
1830 Male, age 51, unknown 137.6
2828 Female, age 72, unknown 133.1
2019 Male, age 18, unknown 132.9
1827 Male, age 72, unknown 131.4
2219 Male, age 76, both hemispheres 128.4
2666 Male, age 74, left hemisphere 125.2
2586 Male, age 75, left hemisphere 124.8
Dorsal raphe nucleus
nTPM: 137.0
2750 Male, age 76, both hemispheres 144.4
2298 Female, age 72, unknown 138.4
1828 Male, age 53, unknown 135.5
2047 Male, age 72, unknown 134.3
2016 Female, age 72, unknown 132.4
Inferior colliculus
nTPM: 134.6
2097 Female, age 72, unknown 139.5
1848 Female, age 42, unknown 135.9
1890 Male, age 53, unknown 131.9
2849 Male, age 72, unknown 131.2
Median raphe nucleus
nTPM: 141.9
2220 Male, age 76, midline 141.9
Pedunculopontine tegmental nucleus
nTPM: 140.7
2334 Male, age 80, both hemispheres 149.2
1921 Female, age 85, both hemispheres 139.8
2338 Male, age 61, both hemispheres 133.1
Periaquaductal grey, anterior
nTPM: 135.2
1947 Male, age 18, unknown 139.9
2502 Female, age 75, unknown 137.2
1795 Male, age 51, unknown 128.4
Periaquaductal grey, dorsal
nTPM: 134.6
2850 Male, age 76, both hemispheres 142.6
2464 Female, age 72, unknown 134.6
1840 Male, age 53, unknown 130.9
1831 Male, age 72, unknown 130.2
Periaquaductal grey, lateral
nTPM: 131.7
2140 Male, age 76, both hemispheres 136.1
2053 Male, age 18, unknown 131.7
2272 Male, age 74, both hemispheres 127.4
Pretectal area
nTPM: 134.2
2224 Female, age 72, unknown 139.0
2667 Female, age 75, unknown 138.3
2316 Male, age 76, right hemisphere 136.7
1815 Male, age 53, unknown 136.3
1817 Female, age 42, unknown 135.7
2825 Male, age 18, unknown 134.9
2273 Male, age 74, both hemispheres 134.0
1816 Male, age 51, unknown 132.6
1944 Female, age 72, unknown 132.5
2007 Male, age 72, unknown 130.9
2407 Male, age 75, both hemispheres 125.1
Red nucleus
nTPM: 141.4
1821 Female, age 72, unknown 151.6
1865 Male, age 51, unknown 148.4
1904 Male, age 53, unknown 147.8
2503 Female, age 72, unknown 145.1
1954 Female, age 42, unknown 144.6
2227 Male, age 72, unknown 144.2
2769 Male, age 72, unknown 141.8
2823 Male, age 76, right hemisphere 141.7
2725 Female, age 75, unknown 139.0
2785 Male, age 18, unknown 136.0
2588 Male, age 74, left hemisphere 132.4
2584 Male, age 75, left hemisphere 124.4
Substantia nigra
nTPM: 137.6
2241 Male, age 72, unknown 151.0
2409 Female, age 72, unknown 145.7
1916 Female, age 42, unknown 141.2
1851 Male, age 51, unknown 141.0
1889 Female, age 72, unknown 141.0
2699 Male, age 18, unknown 139.0
1941 Male, age 53, unknown 132.1
2590 Female, age 75, unknown 131.5
2583 Male, age 75, right hemisphere 127.1
2665 Male, age 74, both hemispheres 126.0
Superior colliculus
nTPM: 133.8
1913 Female, age 42, unknown 140.8
2587 Male, age 74, left hemisphere 140.4
1895 Male, age 76, right hemisphere 137.7
1796 Male, age 53, unknown 135.3
1995 Male, age 72, unknown 134.4
2668 Female, age 75, unknown 134.1
1839 Male, age 51, unknown 133.8
2087 Female, age 72, unknown 132.0
2261 Male, age 18, unknown 131.6
2664 Male, age 75, both hemispheres 118.2
Ventral tegmental area
nTPM: 142.3
2410 Female, age 72, unknown 148.8
2223 Female, age 72, unknown 147.6
1915 Female, age 42, unknown 141.3
2218 Male, age 76, both hemispheres 140.4
2021 Male, age 53, unknown 139.5
1942 Male, age 51, unknown 136.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 160.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 160.5
Samples: 139

Max nTPM: 253.9
Min nTPM: 102.0
Std nTPM: 35.2
Median nTPM: 149.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 253.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 246.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 242.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 241.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 237.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 231.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 226.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 225.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 222.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 221.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 221.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 275.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 275.4
FF:10158-103A5 76 years, female 275.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 96.1
Pig sample Sample description nTPM
Midbrain
nTPM: 88.0
Samples: 4

Max nTPM: 107.4
Min nTPM: 72.0
Sample A Female 107.4
Sample B Female 97.0
Sample C Male 72.0
Sample D Male 75.6
Periaqueductal gray
nTPM: 87.1
Samples: 3

Max nTPM: 92.1
Min nTPM: 83.8
Sample B Female 85.5
Sample C Male 92.1
Sample D Male 83.8
Substantia nigra
nTPM: 96.1
Samples: 4

Max nTPM: 124.5
Min nTPM: 73.3
Sample A Female 124.5
Sample B Female 90.5
Sample C Male 96.0
Sample D Male 73.3
Superior colliculi
nTPM: 90.9
Samples: 4

Max nTPM: 107.0
Min nTPM: 82.1
Sample A Female 107.0
Sample B Female 82.1
Sample C Male 86.5
Sample D Male 87.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 83.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 83.7
Samples: 4

Max nTPM: 88.2
Min nTPM: 79.8
Sample A Male 88.2
Sample B Male 79.8
Sample C Female 85.8
Sample D Female 80.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
68269276 Antisense, RP_041208_02_A10, Mouse strain C57BL/6J (56 days, male) 5.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.