BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:35.6 nTPM
HPA:35.6 nTPM
GTEx:56.6 nTPM
FANTOM5:110.3 Scaled Tags Per Million
Pig:36.9 nTPM
Mouse:63.4 nTPM
Allen mouse:4.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA041082Antibody HPA044227
Glial cells HighMedium
Neuronal cells HighHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 35.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 32.2
1857 Female, age 85, left hemisphere 35.9
2289 Male, age 61, right hemisphere 33.4
2290 Female, age 72, unknown 32.9
1854 Male, age 80, left hemisphere 32.4
2288 Male, age 75, left hemisphere 31.6
1781 Male, age 74, unknown 31.4
2846 Female, age 79, unknown 31.2
2481 Female, age 94, left hemisphere 28.6
Claustrum
nTPM: 28.9
2491 Male, age 75, both hemispheres 32.8
2568 Male, age 61, both hemispheres 32.1
2198 Male, age 80, both hemispheres 30.8
2284 Female, age 91, both hemispheres 30.8
2392 Female, age 94, both hemispheres 29.9
2196 Female, age 79, unknown 28.6
1956 Male, age 74, unknown 27.2
2645 Female, age 72, unknown 24.7
2292 Female, age 85, both hemispheres 23.7
Globus pallidus, externus
nTPM: 27.9
2646 Male, age 61, right hemisphere 32.6
2772 Female, age 79, unknown 30.7
1996 Male, age 80, right hemisphere 28.0
2395 Male, age 75, both hemispheres 25.9
2567 Female, age 72, unknown 22.2
Globus pallidus, internus
nTPM: 25.9
2287 Male, age 75, right hemisphere 31.0
2778 Female, age 91, both hemispheres 28.5
2483 Female, age 94, right hemisphere 27.8
2037 Male, age 80, right hemisphere 24.6
1818 Male, age 74, unknown 24.5
2566 Female, age 72, unknown 24.3
2111 Female, age 85, right hemisphere 20.8
Nucleus accumbens
nTPM: 32.3
1856 Female, age 91, right hemisphere 40.4
1783 Male, age 74, unknown 37.6
1806 Female, age 85, left hemisphere 34.2
2824 Male, age 61, right hemisphere 32.2
2286 Male, age 75, left hemisphere 31.7
2698 Female, age 72, unknown 30.9
2732 Male, age 80, right hemisphere 26.6
2391 Female, age 94, left hemisphere 25.1
Nucleus basalis of Meynert
nTPM: 28.9
2569 Male, age 61, both hemispheres 31.5
2484 Female, age 94, left hemisphere 29.0
2393 Male, age 80, right hemisphere 28.8
2821 Male, age 75, both hemispheres 26.2
Nucleus of the diagonal band
nTPM: 35.6
2195 Female, age 85, both hemispheres 37.6
2775 Male, age 80, right hemisphere 37.0
1812 Female, age 91, both hemispheres 35.4
2029 Male, age 61, right hemisphere 35.2
1979 Male, age 74, unknown 32.6
Olfactory tubercle
nTPM: 34.7
1998 Female, age 91, both hemispheres 37.0
1846 Male, age 80, right hemisphere 36.3
2487 Female, age 94, left hemisphere 36.1
2856 Male, age 75, right hemisphere 29.3
Putamen
nTPM: 30.0
1838 Male, age 80, right hemisphere 37.4
2466 Female, age 79, unknown 33.8
1937 Female, age 91, right hemisphere 31.2
2489 Female, age 72, unknown 29.5
1829 Male, age 74, unknown 29.2
2647 Male, age 75, left hemisphere 24.9
2482 Female, age 94, left hemisphere 24.3
Septal nuclei
nTPM: 31.8
1960 Male, age 74, unknown 41.2
2031 Female, age 72, unknown 34.6
2009 Female, age 91, both hemispheres 31.7
2059 Female, age 85, both hemispheres 31.4
2629 Female, age 94, right hemisphere 29.5
2199 Male, age 80, right hemisphere 27.2
2394 Male, age 61, left hemisphere 27.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 56.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 49.6
Samples: 246

Max nTPM: 83.3
Min nTPM: 25.6
Std nTPM: 11.8
Median nTPM: 49.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 83.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 81.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 78.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 76.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 75.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 75.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 73.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 72.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 71.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 69.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 68.8
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 56.6
Samples: 246

Max nTPM: 103.2
Min nTPM: 25.5
Std nTPM: 13.4
Median nTPM: 57.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 103.2
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 93.3
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 89.6
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 88.9
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 85.0
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 81.1
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 80.7
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 80.4
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 78.7
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 78.7
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 78.4
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 50.9
Samples: 205

Max nTPM: 100.2
Min nTPM: 22.1
Std nTPM: 11.8
Median nTPM: 50.1
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 100.2
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 84.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 79.3
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 78.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 77.6
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 75.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 74.3
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 72.2
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 71.6
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 71.1
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 69.8
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 110.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 84.6
FF:10164-103B2 76 years, female 84.6
Globus pallidus
Scaled Tags Per Million: 71.0
FF:10175-103C4 60 years, female 91.5
FF:10161-103A8 76 years, female 50.5
Nucleus accumbens
Scaled Tags Per Million: 95.7
FF:10037-101F1 23-56 years, mixed 95.7
Putamen
Scaled Tags Per Million: 110.3
FF:10176-103C5 60 years, female 110.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 36.9
Pig sample Sample description nTPM
Caudate
nTPM: 35.5
Samples: 4

Max nTPM: 42.3
Min nTPM: 30.2
Sample A Female 30.2
Sample B Female 38.7
Sample C Male 42.3
Sample D Male 30.8
Putamen
nTPM: 34.4
Samples: 4

Max nTPM: 43.0
Min nTPM: 29.0
Sample A Female 29.8
Sample B Female 29.0
Sample C Male 43.0
Sample D Male 35.7
Septum
nTPM: 37.0
Samples: 4

Max nTPM: 43.7
Min nTPM: 33.3
Sample A Female 36.9
Sample B Female 33.9
Sample C Male 43.7
Sample D Male 33.3
Ventral pallidum
nTPM: 35.7
Samples: 4

Max nTPM: 45.2
Min nTPM: 30.4
Sample A Female 31.0
Sample B Female 36.0
Sample C Male 45.2
Sample D Male 30.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 63.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 60.6
Samples: 4

Max nTPM: 62.3
Min nTPM: 58.2
Sample A Male 62.3
Sample B Male 58.2
Sample C Female 60.7
Sample D Female 61.2
Septum
nTPM: 58.7
Samples: 4

Max nTPM: 61.0
Min nTPM: 57.1
Sample A Male 57.1
Sample B Male 59.3
Sample C Female 61.0
Sample D Female 57.5
Ventral forebrain
nTPM: 63.4
Samples: 4

Max nTPM: 65.1
Min nTPM: 62.2
Sample A Male 63.0
Sample B Male 62.2
Sample C Female 63.2
Sample D Female 65.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.6
76098384 Antisense, RP_060626_01_F09, Mouse strain C57BL/6J (56 days, male) 6.3
79556700 Antisense, RP_071204_01_D04, Mouse strain C57BL/6J (56 days, male) 3.2
1966 Antisense, RP_040507_02_C01, Mouse strain C57BL/6J (56 days, male) 1.3
Pallidum
Expression energy: 4.2
76098384 Antisense, RP_060626_01_F09, Mouse strain C57BL/6J (56 days, male) 6.7
79556700 Antisense, RP_071204_01_D04, Mouse strain C57BL/6J (56 days, male) 3.8
1966 Antisense, RP_040507_02_C01, Mouse strain C57BL/6J (56 days, male) 2.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.