MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:145.5 nTPM
HPA:145.5 nTPM
GTEx:136.9 nTPM
FANTOM5:50.6 Scaled Tags Per Million
Pig:44.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 145.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 110.2
2666 Male, age 74, left hemisphere 149.4
1870 Female, age 42, unknown 120.9
2828 Female, age 72, unknown 117.5
1827 Male, age 72, unknown 116.2
1830 Male, age 51, unknown 111.0
2411 Female, age 72, unknown 108.3
1833 Male, age 53, unknown 102.7
2586 Male, age 75, left hemisphere 93.6
2019 Male, age 18, unknown 92.7
2219 Male, age 76, both hemispheres 89.5
Dorsal raphe nucleus
nTPM: 145.5
1828 Male, age 53, unknown 224.8
2047 Male, age 72, unknown 144.5
2298 Female, age 72, unknown 129.8
2016 Female, age 72, unknown 119.7
2750 Male, age 76, both hemispheres 108.9
Inferior colliculus
nTPM: 101.8
2097 Female, age 72, unknown 115.6
1848 Female, age 42, unknown 108.4
2849 Male, age 72, unknown 95.1
1890 Male, age 53, unknown 88.0
Median raphe nucleus
nTPM: 117.2
2220 Male, age 76, midline 117.2
Pedunculopontine tegmental nucleus
nTPM: 133.0
2338 Male, age 61, both hemispheres 147.9
2334 Male, age 80, both hemispheres 143.8
1921 Female, age 85, both hemispheres 107.3
Periaquaductal grey, anterior
nTPM: 135.1
2502 Female, age 75, unknown 150.3
1795 Male, age 51, unknown 134.9
1947 Male, age 18, unknown 120.1
Periaquaductal grey, dorsal
nTPM: 106.7
2850 Male, age 76, both hemispheres 117.8
2464 Female, age 72, unknown 111.3
1831 Male, age 72, unknown 104.4
1840 Male, age 53, unknown 93.1
Periaquaductal grey, lateral
nTPM: 128.7
2272 Male, age 74, both hemispheres 146.9
2140 Male, age 76, both hemispheres 120.7
2053 Male, age 18, unknown 118.4
Pretectal area
nTPM: 106.4
2825 Male, age 18, unknown 129.1
2224 Female, age 72, unknown 120.2
1817 Female, age 42, unknown 109.8
2316 Male, age 76, right hemisphere 108.2
2273 Male, age 74, both hemispheres 107.2
2667 Female, age 75, unknown 106.2
2007 Male, age 72, unknown 104.7
1816 Male, age 51, unknown 101.1
1944 Female, age 72, unknown 95.1
1815 Male, age 53, unknown 94.2
2407 Male, age 75, both hemispheres 94.1
Red nucleus
nTPM: 103.6
1954 Female, age 42, unknown 114.8
2227 Male, age 72, unknown 110.4
2503 Female, age 72, unknown 109.9
2769 Male, age 72, unknown 108.6
2725 Female, age 75, unknown 104.1
2584 Male, age 75, left hemisphere 102.4
1821 Female, age 72, unknown 101.4
1865 Male, age 51, unknown 101.1
2588 Male, age 74, left hemisphere 101.0
2823 Male, age 76, right hemisphere 98.8
2785 Male, age 18, unknown 95.7
1904 Male, age 53, unknown 94.9
Substantia nigra
nTPM: 105.9
2409 Female, age 72, unknown 124.7
2699 Male, age 18, unknown 120.8
1851 Male, age 51, unknown 108.9
1889 Female, age 72, unknown 108.2
1916 Female, age 42, unknown 103.3
2590 Female, age 75, unknown 102.1
2241 Male, age 72, unknown 101.9
2665 Male, age 74, both hemispheres 101.8
2583 Male, age 75, right hemisphere 94.0
1941 Male, age 53, unknown 93.3
Superior colliculus
nTPM: 113.2
1796 Male, age 53, unknown 199.8
2261 Male, age 18, unknown 118.6
1839 Male, age 51, unknown 109.5
2587 Male, age 74, left hemisphere 107.0
1895 Male, age 76, right hemisphere 105.1
1913 Female, age 42, unknown 103.9
2668 Female, age 75, unknown 100.7
2087 Female, age 72, unknown 97.9
1995 Male, age 72, unknown 96.6
2664 Male, age 75, both hemispheres 93.4
Ventral tegmental area
nTPM: 117.6
2410 Female, age 72, unknown 143.9
1915 Female, age 42, unknown 123.2
1942 Male, age 51, unknown 113.5
2218 Male, age 76, both hemispheres 111.9
2021 Male, age 53, unknown 108.1
2223 Female, age 72, unknown 104.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 136.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 136.9
Samples: 139

Max nTPM: 651.3
Min nTPM: 41.3
Std nTPM: 72.9
Median nTPM: 123.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 651.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 480.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 347.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 284.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 236.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 230.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 228.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 218.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 214.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 212.7
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 211.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.6
FF:10158-103A5 76 years, female 50.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 44.7
Pig sample Sample description nTPM
Midbrain
nTPM: 33.2
Samples: 4

Max nTPM: 61.7
Min nTPM: 20.2
Sample A Female 61.7
Sample B Female 20.3
Sample C Male 20.2
Sample D Male 30.4
Periaqueductal gray
nTPM: 26.6
Samples: 3

Max nTPM: 34.0
Min nTPM: 20.5
Sample B Female 20.5
Sample C Male 25.2
Sample D Male 34.0
Substantia nigra
nTPM: 43.5
Samples: 4

Max nTPM: 58.4
Min nTPM: 23.9
Sample A Female 58.4
Sample B Female 51.6
Sample C Male 23.9
Sample D Male 40.2
Superior colliculi
nTPM: 44.7
Samples: 4

Max nTPM: 73.6
Min nTPM: 19.2
Sample A Female 73.6
Sample B Female 51.8
Sample C Male 19.2
Sample D Male 34.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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