BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:57.7 nTPM
HPA:57.7 nTPM
GTEx:59.3 nTPM
FANTOM5:215.6 Scaled Tags Per Million
Pig:37.4 nTPM
Mouse:105.0 nTPM
Allen mouse:0.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA001359Antibody HPA016884Antibody CAB004436
Glial cells MediumMediumHigh
Neuronal cells MediumHighHigh






BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 57.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 53.5
2481 Female, age 94, left hemisphere 62.5
2846 Female, age 79, unknown 56.1
2288 Male, age 75, left hemisphere 53.8
2290 Female, age 72, unknown 53.0
1857 Female, age 85, left hemisphere 52.4
1781 Male, age 74, unknown 52.2
1854 Male, age 80, left hemisphere 51.1
2289 Male, age 61, right hemisphere 46.9
Claustrum
nTPM: 52.2
1956 Male, age 74, unknown 55.7
2392 Female, age 94, both hemispheres 54.7
2198 Male, age 80, both hemispheres 53.9
2196 Female, age 79, unknown 52.8
2292 Female, age 85, both hemispheres 52.0
2284 Female, age 91, both hemispheres 51.4
2491 Male, age 75, both hemispheres 51.3
2568 Male, age 61, both hemispheres 49.6
2645 Female, age 72, unknown 48.8
Globus pallidus, externus
nTPM: 50.4
2395 Male, age 75, both hemispheres 55.9
2772 Female, age 79, unknown 54.4
1996 Male, age 80, right hemisphere 52.2
2646 Male, age 61, right hemisphere 46.4
2567 Female, age 72, unknown 43.2
Globus pallidus, internus
nTPM: 51.8
2287 Male, age 75, right hemisphere 57.0
2483 Female, age 94, right hemisphere 55.7
2778 Female, age 91, both hemispheres 53.3
1818 Male, age 74, unknown 50.4
2037 Male, age 80, right hemisphere 50.2
2111 Female, age 85, right hemisphere 49.6
2566 Female, age 72, unknown 46.4
Nucleus accumbens
nTPM: 54.1
2391 Female, age 94, left hemisphere 61.2
2698 Female, age 72, unknown 55.5
2286 Male, age 75, left hemisphere 55.3
1856 Female, age 91, right hemisphere 54.9
2824 Male, age 61, right hemisphere 54.2
1806 Female, age 85, left hemisphere 51.9
1783 Male, age 74, unknown 51.3
2732 Male, age 80, right hemisphere 48.5
Nucleus basalis of Meynert
nTPM: 51.0
2821 Male, age 75, both hemispheres 53.4
2393 Male, age 80, right hemisphere 52.5
2484 Female, age 94, left hemisphere 52.0
2569 Male, age 61, both hemispheres 46.1
Nucleus of the diagonal band
nTPM: 57.7
1812 Female, age 91, both hemispheres 63.4
2775 Male, age 80, right hemisphere 59.2
2195 Female, age 85, both hemispheres 57.5
2029 Male, age 61, right hemisphere 56.2
1979 Male, age 74, unknown 52.4
Olfactory tubercle
nTPM: 55.1
1846 Male, age 80, right hemisphere 58.8
1998 Female, age 91, both hemispheres 56.4
2856 Male, age 75, right hemisphere 54.2
2487 Female, age 94, left hemisphere 50.9
Putamen
nTPM: 51.8
2482 Female, age 94, left hemisphere 59.4
2466 Female, age 79, unknown 53.2
1829 Male, age 74, unknown 52.7
1937 Female, age 91, right hemisphere 52.0
1838 Male, age 80, right hemisphere 51.7
2647 Male, age 75, left hemisphere 48.2
2489 Female, age 72, unknown 45.2
Septal nuclei
nTPM: 55.3
2031 Female, age 72, unknown 61.9
1960 Male, age 74, unknown 59.0
2009 Female, age 91, both hemispheres 56.2
2629 Female, age 94, right hemisphere 55.7
2059 Female, age 85, both hemispheres 52.0
2199 Male, age 80, right hemisphere 51.7
2394 Male, age 61, left hemisphere 50.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 59.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 54.2
Samples: 246

Max nTPM: 92.4
Min nTPM: 35.4
Std nTPM: 8.2
Median nTPM: 52.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 92.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 90.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 85.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 80.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 79.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 78.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 77.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 77.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 76.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 70.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 69.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 59.3
Samples: 246

Max nTPM: 97.5
Min nTPM: 35.8
Std nTPM: 10.3
Median nTPM: 59.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 97.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 92.9
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 91.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 89.2
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 88.1
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 84.4
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 80.8
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 80.7
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 79.8
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 78.8
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 77.8
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Brain - Putamen (basal ganglia)
Average nTPM: 53.3
Samples: 205

Max nTPM: 78.3
Min nTPM: 35.4
Std nTPM: 7.3
Median nTPM: 52.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 78.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 72.2
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 70.5
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 70.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 69.8
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 69.0
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 68.8
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 68.7
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 67.7
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 67.2
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 67.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 215.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 146.3
FF:10164-103B2 76 years, female 146.3
Globus pallidus
Scaled Tags Per Million: 114.1
FF:10161-103A8 76 years, female 116.1
FF:10175-103C4 60 years, female 112.0
Nucleus accumbens
Scaled Tags Per Million: 181.7
FF:10037-101F1 23-56 years, mixed 181.7
Putamen
Scaled Tags Per Million: 215.6
FF:10176-103C5 60 years, female 215.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 37.4
Pig sample Sample description nTPM
Caudate
nTPM: 37.3
Samples: 4

Max nTPM: 43.9
Min nTPM: 33.7
Sample A Female 37.4
Sample B Female 33.7
Sample C Male 43.9
Sample D Male 34.2
Putamen
nTPM: 37.4
Samples: 4

Max nTPM: 51.1
Min nTPM: 29.2
Sample A Female 29.2
Sample B Female 33.1
Sample C Male 51.1
Sample D Male 36.1
Septum
nTPM: 35.3
Samples: 4

Max nTPM: 42.3
Min nTPM: 32.3
Sample A Female 42.3
Sample B Female 32.3
Sample C Male 33.4
Sample D Male 33.2
Ventral pallidum
nTPM: 35.5
Samples: 4

Max nTPM: 43.0
Min nTPM: 29.3
Sample A Female 43.0
Sample B Female 35.3
Sample C Male 29.3
Sample D Male 34.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 105.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 98.0
Samples: 4

Max nTPM: 100.9
Min nTPM: 93.4
Sample A Male 100.9
Sample B Male 93.4
Sample C Female 99.9
Sample D Female 97.7
Septum
nTPM: 105.0
Samples: 4

Max nTPM: 117.3
Min nTPM: 99.1
Sample A Male 99.1
Sample B Male 117.3
Sample C Female 102.6
Sample D Female 101.0
Ventral forebrain
nTPM: 102.6
Samples: 4

Max nTPM: 105.8
Min nTPM: 100.2
Sample A Male 100.3
Sample B Male 104.0
Sample C Female 100.2
Sample D Female 105.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
71724552 Antisense, RP_050927_04_H01, Mouse strain C57BL/6J (56 days, male) 0.4
112649906 Antisense, RP_110421_01_A04, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.2
71724552 Antisense, RP_050927_04_H01, Mouse strain C57BL/6J (56 days, male) 0.3
112649906 Antisense, RP_110421_01_A04, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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