BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:3.2 nTPM
HPA:3.2 nTPM
GTEx:4.7 nTPM
FANTOM5:2.6 Scaled Tags Per Million
Pig:6.3 nTPM
Mouse:4.4 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.7
2290 Female, age 72, unknown 3.4
2288 Male, age 75, left hemisphere 3.1
1857 Female, age 85, left hemisphere 2.9
2846 Female, age 79, unknown 2.7
2481 Female, age 94, left hemisphere 2.6
1854 Male, age 80, left hemisphere 2.4
2289 Male, age 61, right hemisphere 2.3
1781 Male, age 74, unknown 1.9
Claustrum
nTPM: 2.0
2392 Female, age 94, both hemispheres 2.3
2196 Female, age 79, unknown 2.2
2491 Male, age 75, both hemispheres 2.1
2568 Male, age 61, both hemispheres 2.1
1956 Male, age 74, unknown 2.0
2284 Female, age 91, both hemispheres 2.0
2198 Male, age 80, both hemispheres 1.8
2292 Female, age 85, both hemispheres 1.8
2645 Female, age 72, unknown 1.7
Globus pallidus, externus
nTPM: 2.3
2395 Male, age 75, both hemispheres 2.5
1996 Male, age 80, right hemisphere 2.4
2772 Female, age 79, unknown 2.3
2567 Female, age 72, unknown 2.1
2646 Male, age 61, right hemisphere 2.1
Globus pallidus, internus
nTPM: 2.6
2287 Male, age 75, right hemisphere 3.3
1818 Male, age 74, unknown 2.7
2037 Male, age 80, right hemisphere 2.7
2778 Female, age 91, both hemispheres 2.6
2483 Female, age 94, right hemisphere 2.5
2111 Female, age 85, right hemisphere 2.4
2566 Female, age 72, unknown 2.0
Nucleus accumbens
nTPM: 2.5
2286 Male, age 75, left hemisphere 3.1
2824 Male, age 61, right hemisphere 2.7
2391 Female, age 94, left hemisphere 2.6
1806 Female, age 85, left hemisphere 2.5
1856 Female, age 91, right hemisphere 2.5
1783 Male, age 74, unknown 2.3
2698 Female, age 72, unknown 2.2
2732 Male, age 80, right hemisphere 2.0
Nucleus basalis of Meynert
nTPM: 3.2
2821 Male, age 75, both hemispheres 4.3
2393 Male, age 80, right hemisphere 3.3
2484 Female, age 94, left hemisphere 3.1
2569 Male, age 61, both hemispheres 2.3
Nucleus of the diagonal band
nTPM: 2.0
2029 Male, age 61, right hemisphere 2.4
2195 Female, age 85, both hemispheres 2.0
1812 Female, age 91, both hemispheres 1.9
2775 Male, age 80, right hemisphere 1.9
1979 Male, age 74, unknown 1.8
Olfactory tubercle
nTPM: 2.1
1846 Male, age 80, right hemisphere 2.3
2487 Female, age 94, left hemisphere 2.1
2856 Male, age 75, right hemisphere 2.0
1998 Female, age 91, both hemispheres 1.9
Putamen
nTPM: 2.7
2466 Female, age 79, unknown 2.9
1838 Male, age 80, right hemisphere 2.8
2482 Female, age 94, left hemisphere 2.8
2489 Female, age 72, unknown 2.8
1829 Male, age 74, unknown 2.7
1937 Female, age 91, right hemisphere 2.6
2647 Male, age 75, left hemisphere 2.3
Septal nuclei
nTPM: 2.0
2031 Female, age 72, unknown 2.3
2394 Male, age 61, left hemisphere 2.1
2199 Male, age 80, right hemisphere 2.0
2629 Female, age 94, right hemisphere 2.0
2009 Female, age 91, both hemispheres 1.9
2059 Female, age 85, both hemispheres 1.9
1960 Male, age 74, unknown 1.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 4.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.9
Samples: 246

Max nTPM: 31.8
Min nTPM: 0.4
Std nTPM: 3.8
Median nTPM: 2.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 31.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 22.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 20.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 19.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 17.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 15.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 15.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 13.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 12.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 12.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 12.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.2
Samples: 246

Max nTPM: 22.2
Min nTPM: 0.2
Std nTPM: 3.0
Median nTPM: 1.2
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 22.2
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 21.4
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 19.8
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 16.4
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 14.4
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 11.5
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 10.7
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 8.9
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 7.6
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 7.3
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 7.0
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Brain - Putamen (basal ganglia)
Average nTPM: 4.7
Samples: 205

Max nTPM: 34.9
Min nTPM: 0.4
Std nTPM: 4.9
Median nTPM: 3.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 34.9
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 31.7
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 30.2
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 19.7
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 18.5
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 17.9
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 17.5
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 16.7
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 15.5
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 14.6
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 12.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.4
FF:10164-103B2 76 years, female 2.4
Globus pallidus
Scaled Tags Per Million: 1.8
FF:10161-103A8 76 years, female 2.8
FF:10175-103C4 60 years, female 0.7
Nucleus accumbens
Scaled Tags Per Million: 2.6
FF:10037-101F1 23-56 years, mixed 2.6
Putamen
Scaled Tags Per Million: 1.8
FF:10176-103C5 60 years, female 1.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 6.3
Pig sample Sample description nTPM
Caudate
nTPM: 5.8
Samples: 4

Max nTPM: 6.0
Min nTPM: 5.6
Sample A Female 5.7
Sample B Female 5.8
Sample C Male 5.6
Sample D Male 6.0
Putamen
nTPM: 6.3
Samples: 4

Max nTPM: 7.4
Min nTPM: 5.5
Sample A Female 5.6
Sample B Female 7.4
Sample C Male 6.5
Sample D Male 5.5
Septum
nTPM: 5.8
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.1
Sample A Female 5.3
Sample B Female 5.9
Sample C Male 6.7
Sample D Male 5.1
Ventral pallidum
nTPM: 6.3
Samples: 4

Max nTPM: 7.7
Min nTPM: 5.5
Sample A Female 5.8
Sample B Female 7.7
Sample C Male 6.0
Sample D Male 5.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 4.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.4
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.2
Sample A Male 0.5
Sample B Male 0.2
Sample C Female 0.5
Sample D Female 0.5
Septum
nTPM: 0.9
Samples: 4

Max nTPM: 1.7
Min nTPM: 0.5
Sample A Male 1.7
Sample B Male 0.5
Sample C Female 0.7
Sample D Female 0.5
Ventral forebrain
nTPM: 4.4
Samples: 4

Max nTPM: 6.3
Min nTPM: 3.0
Sample A Male 3.0
Sample B Male 4.4
Sample C Female 6.3
Sample D Female 4.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69782569 Antisense, RP_050505_03_C08, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
69782569 Antisense, RP_050505_03_C08, Mouse strain C57BL/6J (56 days, male) 0.0

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