MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:77.7 nTPM
HPA:77.7 nTPM
GTEx:132.5 nTPM
FANTOM5:211.6 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 77.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74.2
2586 Male, age 75, left hemisphere 78.2
2019 Male, age 18, unknown 77.3
2219 Male, age 76, both hemispheres 76.7
1870 Female, age 42, unknown 75.1
2411 Female, age 72, unknown 74.7
1827 Male, age 72, unknown 73.5
2828 Female, age 72, unknown 72.6
1830 Male, age 51, unknown 72.3
2666 Male, age 74, left hemisphere 71.1
1833 Male, age 53, unknown 70.8
Dorsal raphe nucleus
nTPM: 73.6
2750 Male, age 76, both hemispheres 75.0
2047 Male, age 72, unknown 74.4
1828 Male, age 53, unknown 73.8
2298 Female, age 72, unknown 73.6
2016 Female, age 72, unknown 71.0
Inferior colliculus
nTPM: 71.8
1890 Male, age 53, unknown 73.4
2097 Female, age 72, unknown 73.1
1848 Female, age 42, unknown 70.8
2849 Male, age 72, unknown 70.1
Median raphe nucleus
nTPM: 73.9
2220 Male, age 76, midline 73.9
Pedunculopontine tegmental nucleus
nTPM: 74.0
2334 Male, age 80, both hemispheres 76.6
2338 Male, age 61, both hemispheres 73.3
1921 Female, age 85, both hemispheres 72.1
Periaquaductal grey, anterior
nTPM: 74.4
1795 Male, age 51, unknown 75.2
1947 Male, age 18, unknown 74.9
2502 Female, age 75, unknown 73.0
Periaquaductal grey, dorsal
nTPM: 70.7
2464 Female, age 72, unknown 72.6
1831 Male, age 72, unknown 70.9
1840 Male, age 53, unknown 70.1
2850 Male, age 76, both hemispheres 69.4
Periaquaductal grey, lateral
nTPM: 69.1
2053 Male, age 18, unknown 70.2
2272 Male, age 74, both hemispheres 69.2
2140 Male, age 76, both hemispheres 68.1
Pretectal area
nTPM: 74.7
2007 Male, age 72, unknown 80.8
1816 Male, age 51, unknown 78.9
1817 Female, age 42, unknown 77.6
2667 Female, age 75, unknown 77.6
1815 Male, age 53, unknown 76.8
1944 Female, age 72, unknown 76.6
2316 Male, age 76, right hemisphere 71.3
2825 Male, age 18, unknown 70.9
2407 Male, age 75, both hemispheres 70.8
2224 Female, age 72, unknown 70.5
2273 Male, age 74, both hemispheres 69.9
Red nucleus
nTPM: 77.3
2588 Male, age 74, left hemisphere 81.6
1821 Female, age 72, unknown 79.2
1865 Male, age 51, unknown 79.1
1904 Male, age 53, unknown 78.9
2785 Male, age 18, unknown 78.9
2725 Female, age 75, unknown 77.0
1954 Female, age 42, unknown 76.6
2503 Female, age 72, unknown 76.6
2769 Male, age 72, unknown 76.4
2227 Male, age 72, unknown 76.1
2823 Male, age 76, right hemisphere 74.3
2584 Male, age 75, left hemisphere 73.3
Substantia nigra
nTPM: 77.7
1916 Female, age 42, unknown 84.2
1851 Male, age 51, unknown 81.7
2665 Male, age 74, both hemispheres 80.7
1941 Male, age 53, unknown 79.6
2583 Male, age 75, right hemisphere 76.8
2699 Male, age 18, unknown 75.9
1889 Female, age 72, unknown 75.8
2241 Male, age 72, unknown 74.9
2409 Female, age 72, unknown 74.5
2590 Female, age 75, unknown 73.4
Superior colliculus
nTPM: 74.0
2087 Female, age 72, unknown 77.3
2668 Female, age 75, unknown 76.7
1796 Male, age 53, unknown 75.3
1913 Female, age 42, unknown 75.0
1895 Male, age 76, right hemisphere 74.0
1995 Male, age 72, unknown 74.0
2261 Male, age 18, unknown 73.0
2587 Male, age 74, left hemisphere 72.7
2664 Male, age 75, both hemispheres 72.1
1839 Male, age 51, unknown 70.4
Ventral tegmental area
nTPM: 76.8
2410 Female, age 72, unknown 83.0
1915 Female, age 42, unknown 79.1
2223 Female, age 72, unknown 77.3
2218 Male, age 76, both hemispheres 76.7
1942 Male, age 51, unknown 72.4
2021 Male, age 53, unknown 72.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 132.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 132.5
Samples: 139

Max nTPM: 436.5
Min nTPM: 45.9
Std nTPM: 48.9
Median nTPM: 121.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 436.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 335.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 251.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 236.5
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 218.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 214.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 207.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 204.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 198.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 197.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 196.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 211.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 211.6
FF:10158-103A5 76 years, female 211.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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