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FBXL16
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:155.1 nTPM
HPA:155.1 nTPM
GTEx:378.2 nTPM
FANTOM5:421.0 Scaled Tags Per Million
Pig:240.8 nTPM
Mouse:608.6 nTPM
Allen mouse:23.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 155.1
Sample id Sample description nTPM
Amygdala
nTPM: 10.1
2517 Female, age 94, left hemisphere 50.5
1987 Female, age 91, left hemisphere 0.0
2514 Male, age 75, right hemisphere 0.0
2695 Female, age 67, right hemisphere 0.0
2814 Male, age 76, right hemisphere 0.0
Basal amygdala
nTPM: 155.1
2827 Female, age 67, right hemisphere 285.6
2243 Female, age 91, right hemisphere 236.8
2685 Female, age 94, left hemisphere 203.6
2609 Male, age 75, right hemisphere 94.8
2110 Male, age 80, left hemisphere 80.1
1955 Male, age 76, both hemispheres 29.7
Central amygdala
nTPM: 57.6
2826 Female, age 94, left hemisphere 207.6
2239 Male, age 80, left hemisphere 80.8
1905 Male, age 76, both hemispheres 0.0
2515 Male, age 75, right hemisphere 0.0
2701 Female, age 91, right hemisphere 0.0
Corticomedial amygdala
nTPM: 118.1
2535 Female, age 67, right hemisphere 317.2
2242 Female, age 91, right hemisphere 140.6
2829 Male, age 80, left hemisphere 135.1
2429 Female, age 94, left hemisphere 63.6
2428 Male, age 75, right hemisphere 52.2
2240 Male, age 76, both hemispheres 0.0
Lateral amygdala
nTPM: 80.9
2534 Female, age 94, left hemisphere 223.8
2256 Male, age 80, left hemisphere 150.3
2255 Female, age 91, right hemisphere 83.3
2830 Female, age 67, right hemisphere 28.1
1883 Male, age 76, both hemispheres 0.0
2516 Male, age 75, right hemisphere 0.0
Stria terminalis, bed nucleus
nTPM: 47.8
2486 Female, age 94, both hemispheres 95.9
1974 Female, age 91, both hemispheres 47.4
2201 Male, age 74, unknown 0.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 378.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 378.2
Samples: 152

Max nTPM: 977.5
Min nTPM: 1.8
Std nTPM: 247.4
Median nTPM: 322.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 977.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 962.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 925.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 892.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 887.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 887.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 858.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 856.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 843.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 821.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 805.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 799.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 790.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 786.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 771.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 767.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 749.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 744.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 723.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 711.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 706.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 697.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 691.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 684.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 662.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 651.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 617.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 610.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 585.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 585.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 583.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 581.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 577.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 572.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 566.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 563.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 561.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 560.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 557.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 536.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 534.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 531.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 528.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 524.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 508.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 504.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 504.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 484.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 474.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 470.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 469.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 462.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 462.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 460.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 460.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 452.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 448.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 442.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 440.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 435.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 428.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 421.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 419.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 407.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 400.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 397.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 397.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 396.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 390.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 385.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 380.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 361.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 357.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 347.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 337.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 323.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 321.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 318.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 312.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 309.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 307.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 306.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 301.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 300.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 289.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 277.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 260.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 259.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 257.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 254.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 253.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 248.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 242.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 240.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 240.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 239.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 235.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 227.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 226.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 226.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 225.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 222.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 218.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 215.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 203.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 202.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 198.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 191.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 188.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 181.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 179.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 178.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 175.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 171.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 169.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 169.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 161.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 158.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 157.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 155.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 152.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 145.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 139.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 137.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 134.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 133.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 130.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 118.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 115.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 109.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 107.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 105.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 104.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 101.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 97.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 94.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 92.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 92.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 92.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 82.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 78.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 76.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 69.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 52.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 50.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 50.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 46.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 46.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 34.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 21.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 19.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 421.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 421.0
FF:10151-102I7 76 years, female 421.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 240.8
Pig sample Sample description nTPM
Amygdala
nTPM: 240.8
Samples: 4

Max nTPM: 300.0
Min nTPM: 177.7
Sample A Female 300.0
Sample B Female 177.7
Sample C Male 257.9
Sample D Male 227.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 608.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 608.6
Samples: 4

Max nTPM: 752.7
Min nTPM: 524.4
Sample A Male 524.4
Sample B Male 608.6
Sample C Female 752.7
Sample D Female 548.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 23.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 23.1
100144433 Antisense, RP_110407_02_C04, Mouse strain C57BL/6J (56 days, male) 23.1

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